View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14275_low_26 (Length: 429)

Name: NF14275_low_26
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14275_low_26
NF14275_low_26
[»] chr5 (7 HSPs)
chr5 (17-419)||(5663596-5663998)
chr5 (53-235)||(5046332-5046515)
chr5 (53-235)||(5047103-5047286)
chr5 (53-235)||(5047874-5048057)
chr5 (187-383)||(5664702-5664895)
chr5 (282-335)||(5046572-5046625)
chr5 (282-335)||(5047343-5047396)
[»] chr4 (7 HSPs)
chr4 (53-383)||(24853230-24853562)
chr4 (68-235)||(51246521-51246689)
chr4 (67-235)||(17525522-17525691)
chr4 (53-378)||(28786894-28787223)
chr4 (95-235)||(28787887-28788027)
chr4 (56-377)||(24856133-24856448)
chr4 (282-332)||(51246738-51246788)
[»] chr7 (1 HSPs)
chr7 (17-235)||(22622406-22622626)
[»] chr1 (5 HSPs)
chr1 (23-213)||(22055518-22055710)
chr1 (85-209)||(22056597-22056721)
chr1 (134-226)||(29371869-29371961)
chr1 (281-385)||(22056427-22056530)
chr1 (57-123)||(29373056-29373123)
[»] scaffold0406 (1 HSPs)
scaffold0406 (53-346)||(6164-6460)
[»] chr8 (1 HSPs)
chr8 (53-246)||(1275221-1275412)
[»] chr3 (8 HSPs)
chr3 (67-235)||(12739240-12739409)
chr3 (67-235)||(12738089-12738258)
chr3 (17-134)||(1896747-1896865)
chr3 (17-134)||(1906193-1906311)
chr3 (73-212)||(15022963-15023103)
chr3 (67-112)||(12737463-12737509)
chr3 (17-85)||(2932818-2932888)
chr3 (17-84)||(1888680-1888748)
[»] chr2 (1 HSPs)
chr2 (75-235)||(20978872-20979034)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 5663998 - 5663596
Alignment:
Q  17 atattctagttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttttagattgttctattaatgtctaaattaaatta 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5663998 atattctagttaaaaaatgacaatgtctgatcagagaaactagagtagcttaaagttgctacatgttttagattgttctattaatgtctaaattaaattg 5663899  T
Q  117 tagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaatt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5663898 tagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaatcacttataaatagaatt 5663799  T
Q  217 atatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggcttccatatactatattctctccttctacaatgagctatttaccaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5663798 atatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggcttccatatactatattctctccttctacaatgagctatttatcaat 5663699  T
Q  317 gtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaacaatatactcataagttatgaagggtgccactcct 416  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5663698 gtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatatattttctaacaatatactcgtaagttatgaagggtgccactcct 5663599  T
Q  417 atg 419  Q
    |||    
T  5663598 atg 5663596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 5046332 - 5046515
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || | |||||||||| ||||||| ||||||||| ||||||||||||  |||| ||| |||||||||||||||||||||||||  ||||||     
T  5046332 aaactagaataacataaagttgcttcatgtttatagattgttttattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagat 5046431  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    | || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||||||    
T  5046432 aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtatt 5046515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 5047103 - 5047286
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || | ||||||||||||||||||  |||||||||||||||||||||  |||| ||| ||||| ||| |||||||||||||||  | ||||     
T  5047103 aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtctagat 5047202  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    | || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047203 aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5047286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 5047874 - 5048057
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || | ||||||||||||||||||  |||||||||||||||||||||  |||| ||| ||||| ||| |||||||||||||||  ||||||     
T  5047874 aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtgtagat 5047973  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    | || ||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047974 aaggcaaacaaaggcctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5048057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 383
Target Start/End: Complemental strand, 5664895 - 5664702
Alignment:
Q  187 aaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaata-tattaagggcttccatatactatat 285  Q
    |||||||||||||||| ||||    || |||||||||||| |||||||| || | |||||||||||| |||||| |||| ||||||||| | ||  ||||    
T  5664895 aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagggcttccctgtatcatat 5664800  T
Q  286 tctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaaca 383  Q
    |||||||| ||||||| |  || ||||||||||||| ||||||||||||||| |   |||| | ||| ||| ||| ||||| ||||||||||||||||    
T  5664799 tctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaaca 5664702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 5046572 - 5046625
Alignment:
Q  282 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 335  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5046572 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 5047343 - 5047396
Alignment:
Q  282 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 335  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5047343 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5047396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 53 - 383
Target Start/End: Original strand, 24853230 - 24853562
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || | ||||||| ||| |||||| ||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||||    
T  24853230 aaactagaataacataaagtttctaaatgtttctagattgttctattaatatataaattaagttatagccaagaaacatctataataatctaatgtagaa 24853329  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa-atac 250  Q
    | || ||||||||||||| | | |||||||| || |||||||||| | ||| |||||||||| |||| ||| ||| |||||||| || | ||||| || |    
T  24853330 aaggcaaacaaaggcctaaattattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgc 24853429  T
Q  251 aattacaat-atattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattg 349  Q
    |||  |||| ||||| | ||||||   |||  ||||||| |||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |     
T  24853430 aatgtcaataatattgaaggcttcatcatatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactc 24853529  T
Q  350 taccactagctcccacaatatatattttctaaca 383  Q
     |||||||||||| ||| ||||| ||||||||||    
T  24853530 caccactagctcctacactatat-ttttctaaca 24853562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 51246521 - 51246689
Alignment:
Q  68 aaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggc 166  Q
    |||||||||| |||||| ||||||| ||||||||||||||  |||| ||| |||||||||||||||||||||||||  |||||| | || ||||||||||    
T  51246521 aaagttgctagatgtttctagattgctctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaaggc 51246620  T
Q  167 ctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    ||||| | |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||    
T  51246621 ctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtatt 51246689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 17525691 - 17525522
Alignment:
Q  67 taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg 165  Q
    |||||||||||||||||| | |||| |||||||||||||||  |||| ||| |||||||||||||||||||||||||  |||||| | || |||||||||    
T  17525691 taaagttgctacatgtttcttgattattctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaagg 17525592  T
Q  166 cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    |||||| | |||||||| ||||||||||| ||||| |||||||||||| ||||||| |||  ||||||||    
T  17525591 cctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtatt 17525522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 378
Target Start/End: Original strand, 28786894 - 28787223
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || |||||||||||||||||||| || |||||| |||||||||||  ||||| || ||||||||||||||||||||| |||| ||||||||    
T  28786894 aaactagaataacttaaagttgctacatgtttctaaattgttatattaatgtctcgattaagttgtagcctagaaacatctataattatcttatgtagaa 28786993  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaa-acatttaaatac 250  Q
    | |||| ||||||||||| | | |  ||||| ||||||||||||||||||| ||||||||||  ||||| ||||| |||||||| ||  | |||| || |    
T  28786994 aaggaatacaaaggcctaaattat--tagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgc 28787091  T
Q  251 aat-tacaatatattaagggctt--cca-tatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaacca 346  Q
    ||| || |  ||||| | |||||  |||  |||  ||||| |||||| ||| |||||| || |||| |||||||||| |||||| |||||||| ||||||    
T  28787092 aatgtatataatattgaaggcttcaccaccatatcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaacca 28787191  T
Q  347 ttgtaccactagctcccacaatatatattttc 378  Q
     | ||||| ||||||| ||| ||||| |||||    
T  28787192 ctctaccattagctcctacactatattttttc 28787223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 28787887 - 28788027
Alignment:
Q  95 tattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatct 194  Q
    ||||| |||||  ||||| || ||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| | |||||||| |||||||||||    
T  28787887 tattattgtctcgattaagttgtagcctagaaatatctataattatctaatgtacaaaaggaaaacaaaggcctagattattctagttctagaaacatct 28787986  T
Q  195 tcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    |||| ||| ||||||||||  ||||||||||| ||||||||    
T  28787987 tcaaacacctataaatagacatatatgggtgcaattgtatt 28788027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 377
Target Start/End: Original strand, 24856133 - 24856448
Alignment:
Q  56 ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacg 154  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||  |||| ||| |||||| |||||        ||| |||||||| || |    
T  24856133 ctagaataacttaaagttgctacatgtttctagattgttctattaatgtctagtttaagttaaagcctataaaca--------aat-taatgtaggaaag 24856223  T
Q  155 gaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa-atacaat 253  Q
    | ||||||||||||||| | |||||||| ||||||||| ||| | ||| |||||||||| ||||  || ||| ||||||||  | | ||||| || ||||    
T  24856224 gcaaacaaaggcctagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaat 24856323  T
Q  254 tacaata-tattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtac 352  Q
      ||||| |||| |  | |||   |||  |||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |  ||    
T  24856324 gtcaataatattgaaagtttcaccatatcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgctactaaacactccac 24856423  T
Q  353 cactagctcccacaatatatatttt 377  Q
    |||||||||  |  |||||||||||    
T  24856424 cactagctcatatgatatatatttt 24856448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 51246738 - 51246788
Alignment:
Q  282 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtcc 332  Q
    |||||||||||| ||||||||||||| || | |||||||||| ||||||||    
T  51246738 atattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc 51246788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 22622626 - 22622406
Alignment:
Q  17 atattctagttaaaa-aatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaat 114  Q
    ||||||||||||||| ||||| |||||||| |   | |||||| | |||||||||||||| |||||||| ||||||||||||||||| |||| |||||||    
T  22622626 atattctagttaaaataatgataatgtctattagaaaaaactataatagcttaaagttgccacatgtttctagattgttctattaatatctagattaaat 22622527  T
Q  115 tatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaa 214  Q
    | ||||||| ||||||||| |||| ||||||||||||| || |||||||| |||||| | ||||| || |||||||||||||| ||||||||||||||      
T  22622526 tgtagcctaaaaacatctacaatattctaatgtagaaaaggcaaacaaagacctagattattctaattctagaaacatcttcaggcacttataaataggc 22622427  T
Q  215 ttatatgggtgcgattgtatt 235  Q
    |||||||||||| ||||||||    
T  22622426 ttatatgggtgcaattgtatt 22622406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 22055710 - 22055518
Alignment:
Q  23 tagttaaaaa-atgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatag 119  Q
    |||||||||| ||||||||||||| | ||||||| ||| | ||||||||| |||||| |||||| |||||||||| ||||||||||| |||||||| |||    
T  22055710 tagttaaaaatatgacaatgtctatt-agagaaaactataatagcttaaatttgctaaatgtttctagattgttcaattaatgtctagattaaattgtag 22055612  T
Q  120 cctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaataga 213  Q
    ||||||||||||||||||||||||||||| ||| || |||||||| |||||| | || ||||| ||||| ||||||||||||||||||||||||    
T  22055611 cctagaaacatctataataatctaatgtataaaaggcaaacaaagacctagattattttagttctagaatcatcttcaagcacttataaataga 22055518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 22056721 - 22056597
Alignment:
Q  85 tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagtttt 184  Q
    ||||||||||| |||||||||| ||||| || ||||||| |||||||||| ||||||||||||||||| || ||||||| ||||||| | |||||||| |    
T  22056721 tagattgttctgttaatgtctagattaatttgtagcctaaaaacatctatgataatctaatgtagaaaaggcaaacaaatgcctagattattctagttct 22056622  T
Q  185 agaaacatcttcaagcacttataaa 209  Q
    ||||| |||||||||||| ||||||    
T  22056621 agaaatatcttcaagcacctataaa 22056597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 29371869 - 29371961
Alignment:
Q  134 taataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgc 226  Q
    ||||||| |||||| |||| || ||||||| | ||||| | ||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  29371869 taataatgtaatgtggaaaaggcaaacaaaagtctagattattcaagtattataaacatcttcaagcacttataaatagatttatatgggtgc 29371961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 385
Target Start/End: Complemental strand, 22056530 - 22056427
Alignment:
Q  281 tatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttcta 380  Q
    |||||||||||||  ||||||||| || |||| ||| |||||| ||||||||||||||| |||| | | ||||| | ||||| ||| ||||| ||||| |    
T  22056530 tatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgctactaacaaatctaccattggctcctacactatat-ttttcca 22056432  T
Q  381 acaat 385  Q
    |||||    
T  22056431 acaat 22056427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 29373056 - 29373123
Alignment:
Q  57 tagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagccta 123  Q
    |||| ||| ||||||||||||||||||| |||||||||||| |||| |||| ||||| || |||||||    
T  29373056 tagaatagtttaaagttgctacatgtttctagattgttctactaatatctagattaagttgtagccta 29373123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 346
Target Start/End: Original strand, 6164 - 6460
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || | ||||||||||||||||||  |||||||||||||||||||||  |||| ||| |||||||||||||||||||||||||  || |||     
T  6164 aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgcagat 6263  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacattt-aaatac 250  Q
    | || ||||||||||||||| | |||||||| |||||||| |||||||||| |||||||||| |||||||||||  |||||||| || | ||| | || |    
T  6264 aaggcaaacaaaggcctagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgc 6363  T
Q  251 aattacaat-atattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaacca 346  Q
    |||  |||| ||||| | ||||||   | |  ||||| |||||| ||| ||||||||| || | |||||||||| ||||||||||||||| ||||||    
T  6364 aatgtcaataatattgaaggcttcacaaaatcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaacca 6460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 1275412 - 1275221
Alignment:
Q  53 aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 151  Q
    |||||||| || || ||||||||||||||||| |||||| || ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1275412 aaactagaataactcaaagttgctacatgtttctagattattttattaatgtataaattaagttatagcttagaaacatctataataatctaatgtagaa 1275313  T
Q  152 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa 246  Q
    | || |||||||||||||||    ||||||| |||||||| |||||||||| ||||| || |  ||||||||||| |||||||| |||| |||||    
T  1275312 atggcaaacaaaggcctaga---atctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaa 1275221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 67 - 235
Target Start/End: Original strand, 12739240 - 12739409
Alignment:
Q  67 taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg 165  Q
    |||||||||||||||||| ||||||||||||||||| ||||  |||| ||| |||||||||||||||||||||||||  |||||||| || ||||||| |    
T  12739240 taaagttgctacatgtttctagattgttctattaatatctaggttaagttacagcctagaaacatctataataatcttgtgtagaaaaggcaaacaaaag 12739339  T
Q  166 cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    |||||| | || ||||| ||||||||||| ||||||  ||||||||||||||| ||| ||| ||||||||    
T  12739340 cctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtatt 12739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 67 - 235
Target Start/End: Original strand, 12738089 - 12738258
Alignment:
Q  67 taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg 165  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||  || |||||||||||||| ||||| ||||  |||||||| || ||||||| |    
T  12738089 taaagttgctacatgtttgtagattgttctattaatgtctagattaaggtaaagcctagaaacatcaataattatcttgtgtagaaaaggcaaacaaaag 12738188  T
Q  166 cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 235  Q
    ||||||   || ||||| ||||||||||| ||||||| |||||||| | |||| ||||||| ||||||||    
T  12738189 cctagataattttagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtatt 12738258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 1896747 - 1896865
Alignment:
Q  17 atattctagtt-aaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaat 114  Q
    ||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||| |||||||| || ||||||||||| ||| |||  |||| |    
T  1896747 atattctagtttaaaaaatgacaatgtctatt-agaaaaactagaatagcttaaagttgccacatgtttatatattgttctattgatgactaggttaagt 1896845  T
Q  115 tatagcctagaaacatctat 134  Q
    | ||||||||||||||||||    
T  1896846 tgtagcctagaaacatctat 1896865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 1906193 - 1906311
Alignment:
Q  17 atattctagtt-aaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaat 114  Q
    ||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||| |||||||| || ||||||||||| ||| |||  |||| |    
T  1906193 atattctagtttaaaaaatgacaatgtctatt-agaaaaactagaatagcttaaagttgccacatgtttatatattgttctattgatgactaggttaagt 1906291  T
Q  115 tatagcctagaaacatctat 134  Q
    | ||||||||||||||||||    
T  1906292 tgtagcctagaaacatctat 1906311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 15022963 - 15023103
Alignment:
Q  73 tgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctaga 171  Q
    ||||| |||||| ||||||||||||||||||| ||  || | ||| || ||| ||||||||||||||||||  |||||| | || ||||||| |||||||    
T  15022963 tgctatatgtttctagattgttctattaatgtttaggttcagttaaagtctaaaaacatctataataatcttgtgtagataaggcaaacaaatgcctaga 15023062  T
Q  172 ctcttctagttttagaaacatcttcaagcacttataaatag 212  Q
     | || ||||| ||||||||||| ||||||| |||||||||    
T  15023063 ttattttagttctagaaacatctacaagcacctataaatag 15023103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 12737463 - 12737509
Alignment:
Q  67 taaagttgctacatgttt-tagattgttctattaatgtctaaattaa 112  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  12737463 taaagttgctacatgtttgtagattgttctattaatgtctagattaa 12737509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 2932888 - 2932818
Alignment:
Q  17 atattctagttaaaaaa--tgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgtttt 85  Q
    |||||||||||||||||  |||||||||||| |   | |||||||| ||||||||||||||||||| ||||    
T  2932888 atattctagttaaaaaaaatgacaatgtctattagaaaaaactagaatagcttaaagttgctacatatttt 2932818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 1888680 - 1888748
Alignment:
Q  17 atattctagttaaaaaa-tgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt 84  Q
    ||||||||||||||||| |||||||||||| |   | |||| ||| ||||| |||||||||||||||||    
T  1888680 atattctagttaaaaaaatgacaatgtctattagaaaaaacaagaatagctaaaagttgctacatgttt 1888748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 20979034 - 20978872
Alignment:
Q  75 ctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagact 173  Q
    |||||||||| |||||||||||||| |||| ||  |||| ||| ||||||||||||||||||||||| |  |||||| | || |||||||||  |||| |    
T  20979034 ctacatgtttctagattgttctattcatgtttaggttaagttaaagcctagaaacatctataataatattgtgtagataaggcaaacaaaggtatagatt 20978935  T
Q  174 cttctagttttagaaacatcttc-aagcacttataaatagaattatatgggtgcgattgtatt 235  Q
     |||||||| ||||||||||| | ||| || |||||||| | |||||||||||| ||| ||||    
T  20978934 attctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatatt 20978872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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