View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_27 (Length: 421)
Name: NF14275_low_27
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_27 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 8972174 - 8971786
Alignment:
| Q |
17 |
agagatgatccggatgaagatgtgaatgcggagatggattgggcattgaagcaggcaggaaatttgaatcttgaattcagtgaaatcggagatgttcgga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8972174 |
agagatgatccggatgaagatgtgaatgcggagatggactggacattgaagcaggcaggaaatttgaatcttgaattcagtgaaatcggagatgttcgga |
8972075 |
T |
|
| Q |
117 |
aacttactggttgctcgttctcctgtgatggaagaggacttgctacctggtatgttctttttgcaaattgggcagcttaaagtttaattttccatcttac |
216 |
Q |
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|||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8972074 |
aacttactggctgctcgttctcccgtgatggaaaaggacttgctacctggtatgttctttttgcaaattgggcagcttaaagtttaattttccatcttac |
8971975 |
T |
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| Q |
217 |
ttgccttgtctaatcttctaatgccttttttcttttctagttctctaactggagctaccaagttgtggagcatgcctgatgtnnnnnnngtttctacctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8971974 |
ttgccttgtctaatcttctaatgccttttttcttttctagttctctaactggagctaccaagttgtggagcatgcctgatgtaaaaaaagtttctacctt |
8971875 |
T |
|
| Q |
317 |
caagaggcacaccgagcgtgctactgatgttgcatattctcctgtgcacagtaatcatttagcaactgcctctgctgactggacaaatg |
405 |
Q |
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| T |
8971874 |
caagaggcacaccgagagtgctactgatgttgcatattctcctgtgcacaataatcatttagcaactgcctctgctgactggacaaatg |
8971786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 14590493 - 14590878
Alignment:
| Q |
17 |
agagatgatccggatgaagatgtgaatgcggagatggattgggcattgaagcaggcaggaaatttgaatcttgaattcagtgaaatcggagatgttcgga |
116 |
Q |
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||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
14590493 |
agagaggatccggatgaagatgtggatgcggagatagattggacattgaagcaggcagcgaatttgaatcttgaattcagtgaaatcggagatgatcgac |
14590592 |
T |
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| Q |
117 |
aacttactggttgctcgttctcctgtgatggaagaggacttgctacctggtatgttctttttgcaaattgggcagcttaaagtttaattttccatcttac |
216 |
Q |
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|||||||||||||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
14590593 |
cacttactggttgctcgttctcccgggatggaaaagggcttgctacctggtatgtcttttttgcaaattgtgcagcttaaggtttaattttccatcttac |
14590692 |
T |
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| Q |
217 |
ttgccttgtctaatcttctaat-gccttttttcttttctagttctctaactggagctaccaagttgtggagcatgcctgatgtnnnnnnngtttctacct |
315 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
14590693 |
ttgccttgtctaatcttctaatggctttttttcttttctagttctttcactggagctaccaagttgtggagcatgcctaatgttaaaaaagtttctacct |
14590792 |
T |
|
| Q |
316 |
tcaagaggcacaccgagcgtgctactgatgttgcatattctcctgtgcacagtaatcatttagcaactgcctctgctgactggaca |
401 |
Q |
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| T |
14590793 |
tgaaggggcacacccagcgtgctactgatgttgcttattctcctgtgcacaaaaatcatttagcaactgcctctgctgaccggaca |
14590878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 45963 - 45577
Alignment:
| Q |
17 |
agagatgatccggatgaagatgtgaatgcggagatggattgggcattgaagcaggcaggaaatttgaatcttgaattcagtgaaatcggagatgttcgga |
116 |
Q |
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||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |
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| T |
45963 |
agagaggatccggatgaagatgtggatgcggagattgattggacattgaagcaggcagcgaatttgaatcttgaattcagtgaaatcggtgatgatcgac |
45864 |
T |
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| Q |
117 |
aacttactggttgctcgttctcctgtgatggaagaggacttgctacctggtatgt-tctttttgcaaattgggcagcttaaagtttaattttccatctta |
215 |
Q |
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|||||||||||||||||||||| | ||||||| ||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
45863 |
cacttactggttgctcgttctcccgggatggaaaagggcttgctacctggtatgtctttttttgcaaattgtgcagcttaaggtttaattttctatctta |
45764 |
T |
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| Q |
216 |
cttgccttgtctaatcttctaat-gccttttttcttttctagttctctaactggagctaccaagttgtggagcatgcctgatgtnnnnnnngtttctacc |
314 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
45763 |
cttgccttgtctaatcttctaatggctttttttcttttctagttctttcactggagctaccaagttgtggagcatgcctaatgttaaaaaagtttctacc |
45664 |
T |
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| Q |
315 |
ttcaagaggcacaccgagcgtgctactgatgttgcatattctcctgtgcacagtaatcatttagcaactgcctctgctgactggaca |
401 |
Q |
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| T |
45663 |
ttgaaggggcacacccagcgtgctactgatgttgcttattctcctgtgcacaaaaatcatttagcaactgcctctgctgaccggaca |
45577 |
T |
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