View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14275_low_29 (Length: 408)
Name: NF14275_low_29
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_29 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 79 - 391
Target Start/End: Original strand, 35906731 - 35907041
Alignment:
| Q |
79 |
aaaagaatatcacataattggttaatttattttctcttaatttgaaatttctagtctcttcaataaatatgaagagagttttgttaataatgagtatgtt |
178 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35906731 |
aaaagaatatcacataattcgttaatttatttcctcttaatttgaaatttctagtctcttcaataaatatgaagagagttttgttagtaatgagtatgtt |
35906830 |
T |
|
| Q |
179 |
gcaaatgaaaattctagataaatttgactctttggagcaccgtttaactcaacatttttaaatagttattgtctttcttttgaaggaaaaatagttatgg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35906831 |
gcaaatgaaaattctagataaatttgactctttggagcaccatttaactcaacatttttaaatagttattgtctttcttttgaaggaaaaatagttatgg |
35906930 |
T |
|
| Q |
279 |
tcannnnnnnnnnnnnnnnnatgtcaatttgatttacatttatataagtaaaactatcgtacttttttctcataagttaatttaatatataaatttttaa |
378 |
Q |
| |
|
| | |||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35906931 |
tta--ttttttgttttttttatgtcaatttaatttacatttatataagtaaaattatcgtgcttttttctcataagttaatttaatatataaatttttaa |
35907028 |
T |
|
| Q |
379 |
aaagtaacttttt |
391 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35907029 |
aaagtaacttttt |
35907041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 7184099 - 7184262
Alignment:
| Q |
77 |
tcaaaagaatatcacataattggttaatttattttctcttaatttgaaatttctagtctcttcaataaatatgaagagagttttgttaataatgagtatg |
176 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| ||||| ||||| | |||| ||||||||||||| ||| | ||||||||||||| || || | | |
|
|
| T |
7184099 |
tcaaaagaatatcacgtaaata-ttaatttattttgtcttattttgacacttctggtctcttcaataactataatgagagttttgttagtag-gaatttc |
7184196 |
T |
|
| Q |
177 |
ttgcaaatgaaaattctagataaatttgactctttggagcaccgtttaactcaacatttttaaata |
242 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
7184197 |
ttgcaaatgacactactagataaatttgactctttgaagcacaattgaactcaacatttttaaata |
7184262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 15238566 - 15238781
Alignment:
| Q |
31 |
tacttcaaataaatttatttgtcaaaaatttacagaaatatagaattcaaaagaatatcacataattggttaatttattttctcttaatttgaaatttct |
130 |
Q |
| |
|
||||| |||||||||||||| ||||||| | |||||||| ||| |||||||| |||||||||||| | |||||||||| || || ||||| |||||| |
|
|
| T |
15238566 |
tactttaaataaatttatttatcaaaaaatggtagaaatatggaagtcaaaagac-atcacataattgataaatttattttgtcatattttgacatttct |
15238664 |
T |
|
| Q |
131 |
agtctcttcaataaatatgaagagagttttgttaataatgagtatgttgcaaatgaaaattctagataaatttgactctttggagcaccgtttaactcaa |
230 |
Q |
| |
|
|||||||||||| | | ||||| ||||||| ||| ||| | |||||||||| | ||||| |||||||| || | || |||| |||| | |||| |
|
|
| T |
15238665 |
agtctcttcaattatt----agagaactttgttagcaataagtttcttgcaaatgacacttctaaataaatttcaccatctgaagcatcgttgagttcaa |
15238760 |
T |
|
| Q |
231 |
catttttaaatagttattgtc |
251 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
15238761 |
caattttaaatagttattgtc |
15238781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 21982471 - 21982421
Alignment:
| Q |
341 |
ttttttctcataagttaatttaatatataaatttttaaaaagtaacttttt |
391 |
Q |
| |
|
|||||||| |||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
21982471 |
ttttttcttataagttaatttaatacattaatttttaaaaagtaatttttt |
21982421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 23281522 - 23281399
Alignment:
| Q |
80 |
aaagaatatcacataattggttaatttattttctcttaatttgaaatttctagtctcttcaataaatatgaagagagttttgttaataatgagtatgttg |
179 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||| | |||||||||||| ||||||| ||| || ||||||||||| ||||||| ||| |
|
|
| T |
23281522 |
aaagaatatcacataattgataaatttatttcatcttattttaacatttctagtctcgtcaataactataaaaagagttttgttcgcaatgagttgcttg |
23281423 |
T |
|
| Q |
180 |
caaatgaaaattctagataaattt |
203 |
Q |
| |
|
|||||| | |||||||||||||| |
|
|
| T |
23281422 |
aaaatgacatttctagataaattt |
23281399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 27982936 - 27982877
Alignment:
| Q |
192 |
ctagataaatttgactctttggagcaccgtttaactc-aacatttttaaatagttattgt |
250 |
Q |
| |
|
||||||||||||||||||||| | || |||| ||||| |||||||||||||||||||||| |
|
|
| T |
27982936 |
ctagataaatttgactctttgaaacatcgttgaactctaacatttttaaatagttattgt |
27982877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 44235339 - 44235433
Alignment:
| Q |
156 |
gttttgttaataatgagtatgttgcaaatgaaaattctagataaatttgactctttggagcaccgtttaactcaacatttttaaatagttattgt |
250 |
Q |
| |
|
||||||||| ||||||| | |||||||||| | |||||||| |||||||| |||| | || ||| ||||||||||||||||||| ||||||| |
|
|
| T |
44235339 |
gttttgttagcaatgagtttcttgcaaatgacacgtctagatatatttgactttttgaaacattgttgaactcaacatttttaaatatttattgt |
44235433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 27982801 - 27982769
Alignment:
| Q |
352 |
aagttaatttaatatataaatttttaaaaagta |
384 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
27982801 |
aagttaatttaatatattaatttttaaaaagta |
27982769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 236047 - 236132
Alignment:
| Q |
127 |
ttctagtctcttcaataaatatgaagagagttttgttaataatgagtatgttgcaaatgaaaattctagataaatttgactctttg |
212 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||||||| ||||||| | || ||||||| | || |||||||||||||| ||||| |
|
|
| T |
236047 |
ttctaatctcttcaataactataaagatagttttgttaacaatgagtttcttacaaatgacatttttagataaatttgacactttg |
236132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 5324126 - 5324063
Alignment:
| Q |
188 |
aattctagataaatttgactctttggagcaccgtttaactcaacatttttaaatagttattgtc |
251 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||| || |||||||||| ||||||||||||| |
|
|
| T |
5324126 |
aattatagataaatttgactctttgaagcatcgttgaatgcaacattttttaatagttattgtc |
5324063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 47460632 - 47460686
Alignment:
| Q |
196 |
ataaatttgactctttggagcaccgtttaactcaacatttttaaatagttattgt |
250 |
Q |
| |
|
||||||||| | |||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
47460632 |
ataaatttggttatttgaagcatcgttgaactcaacatttttaaatagttattgt |
47460686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University