View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_33 (Length: 378)
Name: NF14275_low_33
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 41825535 - 41825235
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41825535 |
accttctcataaaattttagctatgaaccctctgaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttctatgac |
41825436 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttcatttgcaattgacaatgaattgtagtgtcgtattgttatagatatattat |
217 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |
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| T |
41825435 |
attcttactctaacccattagcattcttaaaagttatgcagttcaatttcatttgcagctgacaatgaattgtagtgtcgcattgttattgatatattat |
41825336 |
T |
|
| Q |
218 |
attccannnnnnnaatggtgtatcaaattaaataatggtaacattgataatttact-ccttcatccctatatttaagcaccttttgtattttcacacttc |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
41825335 |
attccatttttttaatggtgtatcaaattaaataatggtaacattgataatttactcccaccatccctatatttaagcaccttttgcattttcacacttc |
41825236 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
|
|
| T |
41825235 |
t |
41825235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 29611543 - 29611840
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
29611543 |
accttctcataaaattttagctatgaacccc-tgaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttccctgac |
29611641 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttcatttgcaattgacaatgaattgtagtgtcgtattgttatagatatattat |
217 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
29611642 |
attcttactctaacccattagcatttttaaaagctatgcacttcaatttcatttgcaattgccaatgaattgtagtgtcacattgttattgatatattat |
29611741 |
T |
|
| Q |
218 |
attccannnnnnnaatggtgtatcaaattaaataatggtaacattgataatttact-ccttcatccctatatttaagcaccttttgtattttcacactt |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||| |
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| T |
29611742 |
attccatttttttaatggtgtatcaaattaaataatggtaacattgataatttactcccaccatccctatatttaagcaccttttgcattttctcactt |
29611840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 31808366 - 31808067
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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|
| T |
31808366 |
accttctaataaaattttagctatgaaccctctgaattaatttctttgcaccgaatgatgaacccactcacatttactattagttcaatggttccatgac |
31808267 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttcatttgcaattgacaatgaattgtagtgtcgtattgttatagatatattat |
217 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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|
| T |
31808266 |
attcttactctaacctattagcattcttaaaagctatgcaattcaatttcatttgcaattgccaatgaattgtagtgtcgcattgttattgatatattat |
31808167 |
T |
|
| Q |
218 |
attccannnnnnnaatggtgtatcaaattaaataatggtaacattgataatttact-ccttcatccctatatttaagcaccttttgtattttcacacttc |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31808166 |
attcca-ttttttaatggtgtatcaaattaaataatggtaacattgataatttactcccaccatccctatatttaagcaccttttgcattttcacacttc |
31808068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 50537335 - 50537182
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtt---taatggttctat |
114 |
Q |
| |
|
||||| ||||||||||| | ||||||||| ||| || ||| || ||||||||||||||| ||| |||| ||| ||||||||| || | |||||||| | |
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|
| T |
50537335 |
accttttcataaaatttaaactatgaacctcctgaactaacttgtttgcaccgaatgattaactcacttacaattgctattaattcaatcatggttctgt |
50537236 |
T |
|
| Q |
115 |
gacattcttactctaatccattagcattcttaaaagctatgcagttcaatttca |
168 |
Q |
| |
|
| |||||||||||||| ||||| ||| ||||||||| ||||||||||||||| |
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|
| T |
50537235 |
ggcattcttactctaacccattgaaatttttaaaagctgtgcagttcaatttca |
50537182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 15827250 - 15827400
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
| |
|
|||||||| |||||| ||| ||||||||| ||| || |||||||||||||||||||||||||| || |||| ||| ||| ||||| ||||||| || | |
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|
| T |
15827250 |
accttctcgtaaaatcttaactatgaacctcctcaactaatttctttgcaccgaatgatgaactcagtcaccttttctactagttcaatggtttcgtggc |
15827349 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttca |
168 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| ||||||||||||||| |
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|
| T |
15827350 |
attcttactcttacccattgacattcttaaaagctgtgcagttcaatttca |
15827400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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