View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_35 (Length: 369)
Name: NF14275_low_35
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 17595240 - 17594899
Alignment:
| Q |
10 |
cacagagtaacaaaaaagagcaaacaatatggttaatatcactgatactattccaattataccattaataataaatggtataagacatataaacattgcc |
109 |
Q |
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| T |
17595240 |
cacaaagtaacaaaaaagagcaaacaatatggttaatatcactgatactattccaattataccattaataataaatggtataagacatataaacattgcc |
17595141 |
T |
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| Q |
110 |
caattgataaagtcgttcattgtagctgctgttaatgccactttaccaagtccagtataaagaatcttaagatctgaaagaatgtgggccaccactggaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595140 |
caattgataaagtcgttcattgtagctgctgttaatgccacttttccaagtccagtataaagaatcttaagatctgaaagaatgtgggccaccactggaa |
17595041 |
T |
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| Q |
210 |
aacttgtgatagtaacaattaatgaccataataaataaccattacggttcatatatgaattatcatcatatcctttggttttcccaaccaaaaaatatgt |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17595040 |
aacttgtgatagtaacaactaatgaccataataaataagcattacggttcatatatgaattctcatcatatcctttggttttcccaaccaaaaaatatgt |
17594941 |
T |
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| Q |
310 |
tccaagtccaaataatattggaataattgttccaacaattgc |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594940 |
tccaagtccaaataatattggaataattgttccaacaattgc |
17594899 |
T |
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