View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_36 (Length: 365)
Name: NF14275_low_36
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_36 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 4567176 - 4566845
Alignment:
| Q |
17 |
atcatctttatatctggaaagtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgat |
116 |
Q |
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| T |
4567176 |
atcatctttatatctggaaagtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgat |
4567077 |
T |
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| Q |
117 |
taggtattatgttatcatattatat-ttaagattatagggcctaaagtttcttatcctcgacaagtatatttgaga-nnnnnnnnnatcaacgtaaactt |
214 |
Q |
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| T |
4567076 |
taggtattatgttatcatattatatgttaagatcctatggcctaaagtttcttatcctcgacaagtataattgagattttttttttacgaaagtaaactt |
4566977 |
T |
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| Q |
215 |
aattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagccactctaataagaatgtaagc |
314 |
Q |
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| T |
4566976 |
aattcatatcattacttaaaatagaatcaatatgaagaggataaatctcaaatatatggtaactaatctaataacatgccgttctaacaagaatgtgagc |
4566877 |
T |
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| Q |
315 |
aatcatgttcgcttatcgcctaacaaattaaa |
346 |
Q |
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| T |
4566876 |
aatcatgttcgtttatcgcctaacaaattaaa |
4566845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 341
Target Start/End: Original strand, 8670144 - 8670276
Alignment:
| Q |
209 |
aaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagccactctaataagaat |
308 |
Q |
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| T |
8670144 |
aaacttaattcatatatttacttaaaatagagtcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagt |
8670243 |
T |
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| Q |
309 |
gtaagcaatcatgttcgcttatcgcctaacaaa |
341 |
Q |
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| T |
8670244 |
gtgagcaaccatgtttgtttgtcgcctaacaaa |
8670276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 33583044 - 33582916
Alignment:
| Q |
209 |
aaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagccactctaataagaat |
308 |
Q |
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| T |
33583044 |
aaacttaattcatatcattatttaaaatagaatcaatacaagcaggacaaatctcaaatatacgatgactagcccaagaacaagccgccttagcaagagt |
33582945 |
T |
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| Q |
309 |
gtaagcaatcatgttcgcttatcgcctaa |
337 |
Q |
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| T |
33582944 |
gtgagcagccatgttcgcttgtcgcctaa |
33582916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 13478 - 13395
Alignment:
| Q |
207 |
gtaaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataaca |
290 |
Q |
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| T |
13478 |
gtaaacttaattcatatcattacttaaaatatagtcaatacaaggaggacaaatctcaaagacacggtgactagcccaagaaca |
13395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 341
Target Start/End: Original strand, 49525024 - 49525156
Alignment:
| Q |
209 |
aaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagccactctaataagaat |
308 |
Q |
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| T |
49525024 |
aaacttaatgcatatcattacttaaaatagagtcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaagggt |
49525123 |
T |
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| Q |
309 |
gtaagcaatcatgttcgcttatcgcctaacaaa |
341 |
Q |
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| T |
49525124 |
gtgagcagccatgttcgcttgtcgcctaacaaa |
49525156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 44655125 - 44655092
Alignment:
| Q |
213 |
ttaattcatatcattacttaaaatagaatcaata |
246 |
Q |
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| T |
44655125 |
ttaattcatatcattacttaaaatagagtcaata |
44655092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 22573085 - 22573137
Alignment:
| Q |
203 |
caacgtaaacttaattcatatcattacttaaaatagaatcaatatgaggagga |
255 |
Q |
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| T |
22573085 |
caacgcaaatttaattcatatcattatttaaaataaagtcaatataaggagga |
22573137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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