View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_37 (Length: 355)
Name: NF14275_low_37
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 30497959 - 30498315
Alignment:
| Q |
1 |
tttgcattgatactaaatttaga--atatacatgcactttctatttatatgcaatttttgacttttctttggtttgatcagttaagcctaaactcaaatt |
98 |
Q |
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| T |
30497959 |
tttgcattgagactaaatttggattatatacatgcactttttatttatatgcaatttttgacttttctttggtttgatcagttaagcctaaactcaaatt |
30498058 |
T |
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| Q |
99 |
ctaaaaaatgagtgttagcttccttttctaagaacatcctgtagcaccaaacaattggagaagttgaccagctctagttgatgagaaaagtataactnnn |
198 |
Q |
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| T |
30498059 |
ctaaaaaatgagtgttagcttccttttctaagaacatcctgtagcaccaaacaattggagaagttgaccagctctagttgatgagaaaagtataactaaa |
30498158 |
T |
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| Q |
199 |
nnnntgaacaagaattttcaaaacaaggtccacattcaattaagaaaatagcatcttcttcaaaccaatatggtagactcattaggaagaaagttggaaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498159 |
aaaatgaacaagaattttcaaaacaaggtccacattcaattaagaaaatagcatcttcttcaaaccaatatggtagactcattaggaagaaagttggaaa |
30498258 |
T |
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| Q |
299 |
caccacaaaggaagaaagaaagaaagggatggtcaacaccttcatagcatcaagaca |
355 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30498259 |
caccacaaaggaagaaagaaagaaagggatggccaacaccttcatagcatcaagaca |
30498315 |
T |
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