View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_4 (Length: 684)
Name: NF14275_low_4
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_4 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 17595414 - 17595752
Alignment:
| Q |
1 |
aaagtttacagacatgttgattgaacaaacagaagatattgcatcaggttatttggcaccattgttttttgcaagtataggtttgagaagtaatacctat |
100 |
Q |
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| T |
17595414 |
aaagtttacagacatgttgattgaacaaacagaagatattgcatcaggttatttggcaccattgttttttgcaagtataggtttgagaagtaatacctat |
17595513 |
T |
|
| Q |
101 |
tttctttatttgtctcttagtcaaaatatgttgttggtttgtgttatcatgatcttgttgatttcttccaagattgtgagcactgtagttgctacaagta |
200 |
Q |
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| T |
17595514 |
tttctttatttgtctcttagtcaaaatatgttgttggtttgtgttatcatgatcttgttgatttcttccaagattgtgagcactgtagttgctacaagta |
17595613 |
T |
|
| Q |
201 |
tatatggaatgtctcttagagatagtatggctcttggagtgctcatgaatactaaaggtgtcttgtcattgattatactaaacattggatgggatagaaa |
300 |
Q |
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| T |
17595614 |
tatatggaatgtctcttagagatagtatggctcttggagtgctcatgaatacaaaaggtgtcttatcattgattgtactaaacattggatgggatagaaa |
17595713 |
T |
|
| Q |
301 |
ggtattattcatttacttgtatatacacattattgttac |
339 |
Q |
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| T |
17595714 |
ggtattattcatttctttgtatatatacattattgttac |
17595752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 356 - 674
Target Start/End: Original strand, 17595740 - 17596060
Alignment:
| Q |
356 |
acattattgttacttgataaaaccttttgttaccctttgagcttcatgtgcttttnnnnnnnnttacaatgcattcattagcaaaacaaaaaatcaataa |
455 |
Q |
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| T |
17595740 |
acattattgttacttgataaaaccttttgttaccctttgagcttcatgtgctttttaaaaaaattacaatgcattcattagcaaaacaaaaaatcaataa |
17595839 |
T |
|
| Q |
456 |
caagggattttattttaaagaaaattatttttgtcgtcacttaatttaatttataccctagaaatctacgtactttc-nnnnnnnaaatagattcaaaga |
554 |
Q |
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| T |
17595840 |
caagggattttattttaaacaaaattattttcgtcgtcccttaacttgatttatgccctagaaatctacgtactttcttttttttaaatagattcaaaga |
17595939 |
T |
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| Q |
555 |
gcatcaattcaatataaacc-nnnnnnngtagaaaatagaaaataggaactataccaaaacttttttaaaaggtgttaaatcttaaattaggcattccca |
653 |
Q |
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| T |
17595940 |
gcatcaattcaatataaaccaaaaaagagtagaaaatagaaaatagaaactataccaaaacctttttaaaaggtgttaaatctgaaattaggcattccca |
17596039 |
T |
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| Q |
654 |
acttatttccagtataatcta |
674 |
Q |
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| T |
17596040 |
acttatttccagtgtaatcta |
17596060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 660
Target Start/End: Original strand, 34427032 - 34427090
Alignment:
| Q |
602 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
660 |
Q |
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|||| |||||||||||||||||||||||||||| | ||||| || ||||||||| |||| |
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| T |
34427032 |
actaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctatt |
34427090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 642
Target Start/End: Original strand, 10194016 - 10194056
Alignment:
| Q |
602 |
actataccaaaacttttttaaaaggtgttaaatcttaaatt |
642 |
Q |
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| T |
10194016 |
actataccaaaaccttttcaaaaggtgttaaatctgaaatt |
10194056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 655
Target Start/End: Original strand, 41517773 - 41517826
Alignment:
| Q |
602 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaac |
655 |
Q |
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||||||||||||| |||| ||||| || |||||| |||||||||||||||||| |
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| T |
41517773 |
actataccaaaaccttttcaaaagttgcaaaatctgaaattaggcattcccaac |
41517826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 660
Target Start/End: Original strand, 19280593 - 19280646
Alignment:
| Q |
607 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
660 |
Q |
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| T |
19280593 |
accaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatatt |
19280646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 660
Target Start/End: Complemental strand, 45992488 - 45992435
Alignment:
| Q |
607 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
660 |
Q |
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| T |
45992488 |
accaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttatt |
45992435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 572
Target Start/End: Complemental strand, 44127 - 44095
Alignment:
| Q |
540 |
aaatagattcaaagagcatcaattcaatataaa |
572 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
44127 |
aaatagatgcaaagagcatcaattcaatataaa |
44095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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