View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_41 (Length: 325)
Name: NF14275_low_41
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 4243534 - 4243853
Alignment:
| Q |
1 |
catgattctgcccacaataattcttcatggatgaatatctggtatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcatcattgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4243534 |
catgattctgcccacaataattcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcataattgct |
4243633 |
T |
|
| Q |
101 |
tgcccactcgtgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4243634 |
tgcccactcgtgtcaatcttaatgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcggaatgccacactcatctcttctttgt |
4243733 |
T |
|
| Q |
201 |
ttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243734 |
ttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgac |
4243833 |
T |
|
| Q |
301 |
tttatgcacaggttctgctc |
320 |
Q |
| |
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||||||||||| || ||||| |
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| T |
4243834 |
tttatgcacagattatgctc |
4243853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 33496042 - 33495732
Alignment:
| Q |
1 |
catgattctgcccacaataattcttcatggatgaatatctggtatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcatcattgct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||| | |||| |||||||||||||| || |
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| T |
33496042 |
catgattctgcccacaataattctctttggatgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttct |
33495943 |
T |
|
| Q |
101 |
tgcccactcgtgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgt |
200 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| | ||||||||||||| |
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| T |
33495942 |
tgcccacccgtgtcaatcttaatgtaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctcttctttgt |
33495843 |
T |
|
| Q |
201 |
ttgcgcaaaagccatggattgttggaagaatattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgac |
300 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
33495842 |
ttgtgcaaaagccatggattgttggaagaatattggcttatatgatgtgttaagtgagcttctccctcttgctaacaactttactacattgttgtttgac |
33495743 |
T |
|
| Q |
301 |
tttatgcacag |
311 |
Q |
| |
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|||| |||||| |
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|
| T |
33495742 |
tttacgcacag |
33495732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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