View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_42 (Length: 320)
Name: NF14275_low_42
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 53174836 - 53174528
Alignment:
| Q |
1 |
ctattcttcatggtaactacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatgnnnnnnngggttgttaatagtatatg |
100 |
Q |
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| T |
53174836 |
ctattcttcatggtaactacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatgaaaaaaagggttgttaatagtatatg |
53174737 |
T |
|
| Q |
101 |
aaaatcttgttatattgtagatgaaaagttggctcctttagattggaaaacaagacataaaatagttgttgggacagcgcgtggacttcactacttgcac |
200 |
Q |
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| T |
53174736 |
aaaatcttgttatattgtagatgaacagttggctcctttagattggaaaacaagacataaaatagttgttgggacagcgcgtggacttcactacttgcac |
53174637 |
T |
|
| Q |
201 |
aaaggttgcaagaggagaataatccatagagatatcaaggcatcaaacattttattgacaaaacatattcaaccactgtttcttataccctacaatcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||||||| ||| |||| ||| |
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| T |
53174636 |
aaaggttgcaagaggagaataatccatagagatatcaaggcatcaaacattttattgacaaaagattttgaaccacaggttcttataaccttcaatgttt |
53174537 |
T |
|
| Q |
301 |
ctaatgtta |
309 |
Q |
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| ||||||| |
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| T |
53174536 |
caaatgtta |
53174528 |
T |
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