View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_45 (Length: 312)
Name: NF14275_low_45
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 6880455 - 6880169
Alignment:
| Q |
18 |
agaagtttataatcaaaatgatggttctggatattctcaattaatccattagaaataatgatcattctaatcttaattctcctgaattctgatgaaaatt |
117 |
Q |
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| T |
6880455 |
agaagtttataatcaaaatgatggttctggatattctcaattaatccattagaaataatgatcattctaatcttaattctcctgaattctgatgaaaatt |
6880356 |
T |
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| Q |
118 |
ctacatctaattccagataatgaaactttttcaagaacaacttattgcttagccagaggatgcaagaatcctttgttgaataagagcatgcctcattgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6880355 |
ctacatctaattccagataatgaaactttttcaagaacaacttattgcttagccagaggatgcaagaatcctttgttgaataagagcatgcctcattgca |
6880256 |
T |
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| Q |
218 |
ttagctctctaatg--gtgttattgtagaatgaagttataatccttgaaagtattcatccactttctttgtctatattgagttcatt |
302 |
Q |
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|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6880255 |
ttagctctctaatggtgtgttattgtagaatgaagttaaattccttgaaagtattcatccactttctttgtctatattgagttcatt |
6880169 |
T |
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