View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_46 (Length: 304)
Name: NF14275_low_46
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 26376118 - 26376408
Alignment:
| Q |
1 |
atgatgtcttcagctgataccttttctagtccgcccaaaagcctcatgttgaatgatcaatcttctgatatcattttcactccaaacttgagttgtggtg |
100 |
Q |
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| T |
26376118 |
atgatgtcttcagatgataccttttctagtccgtccaaaagcctcatgttgaatgatcaatcttctgatatcattttcactccaaacttgagttgtggtg |
26376217 |
T |
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| Q |
101 |
taatggccaaacctccaaacccgcccgacgccaagtacgaaacgatgatgataaccacgcctcgtggcgcacattatgtgccccaaacaacaatgtggaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26376218 |
taatggccaaacctccaaaaccgcccgacgccaagtacgaaacaatgatgataaccacgcctcgtggcgaacattatgtgccccaaacaacaatgtggaa |
26376317 |
T |
|
| Q |
201 |
acttcaacacttgaaaacctactcatgggatgcaaaagcacttgtagctctagctgctttcactttgaaatatggaaatcttttgtacctc |
291 |
Q |
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| T |
26376318 |
acttcaacaattgaaaacctactcacgggatgcaaaagcacttgtagctctagctgctttcactttgaaatatggaaatcttttgcacctc |
26376408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 33236979 - 33237122
Alignment:
| Q |
147 |
gatgataaccacgcctcgtggcgcacattatgtgccccaaacaacaatgtggaaacttcaacacttgaaaacctactcatgggatgcaaaagcacttgta |
246 |
Q |
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||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| || |
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| T |
33236979 |
gatgataaccacgcctcgtggcgaacgttatgtgcatcaaacaacaatgtggatacttcaacagctgaaaacctattcatgggatgcaaaagcacttata |
33237078 |
T |
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| Q |
247 |
gctctagctgctttcactttgaaatatggaaatcttttgtacct |
290 |
Q |
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| T |
33237079 |
gctctagctgctttcactttggaatatggaaatcttttgtacct |
33237122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 33221165 - 33221273
Alignment:
| Q |
170 |
cacattatgtgccccaaacaacaatgtggaaacttcaacacttgaaaacctactcatgggatgcaaaagcacttgtagctctagctgctttcactttgaa |
269 |
Q |
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|||||| ||| | |||||||||| | |||| |||||| || ||| | | |||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
33221165 |
cacattgtgtacaccaaacaacactatggattcttcaaaacctgagatcttactcatgggatgcaaaagcacttataactctagctgctttcactttgga |
33221264 |
T |
|
| Q |
270 |
atatggaaa |
278 |
Q |
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||||||||| |
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| T |
33221265 |
atatggaaa |
33221273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 35680741 - 35680861
Alignment:
| Q |
5 |
tgtcttcagctgataccttttctagtccgcccaaaagcctcatgttgaatgatcaatcttctgatatcattttcactccaaacttgagttgtggtgtaat |
104 |
Q |
| |
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|||| |||| |||||||||| |||||| | |||||||| |||||| |||||||||||||| |||||||| ||||||| |||| |||||||||||||| || |
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| T |
35680741 |
tgtcatcagttgatacctttcctagtcagtccaaaagcgtcatgtcgaatgatcaatcttttgatatcagtttcacttcaaatttgagttgtggtgtcat |
35680840 |
T |
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| Q |
105 |
ggccaaacctccaaacccgcc |
125 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
35680841 |
ggccaaacctccaaagccgcc |
35680861 |
T |
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