View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_47 (Length: 302)
Name: NF14275_low_47
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 12247218 - 12246941
Alignment:
| Q |
12 |
aacaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaacccaattaactcaaaaataatttatcatgatttgt |
111 |
Q |
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| T |
12247218 |
aacaacaaaagaaacttaactatgacccaacccaataaaaaagaaacagaaagaaataactgcaacccaattaactcaaaaataatttatcatgatttat |
12247119 |
T |
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| Q |
112 |
accctctactgtgtatttcttccgtttttccacaactgcta-aatggttctcaccctttatctctcaatag-nnnnnnnncctgcatccctccataattt |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
12247118 |
accctctactgtgtatctcttccgtttttccacaacttctacaatggttcacaccctttatctctcaatagtttctttttcctgcatccctccataattt |
12247019 |
T |
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| Q |
210 |
tcttccattctacaatttcttcatcatttaatacttctgttatggccttcaatttagataagaaaattcggatctgtg |
287 |
Q |
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| T |
12247018 |
tcttccattctacaatttcttcatcatttagtacttctgttatggccttcaatttagataaggaaattcggatctgtg |
12246941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 68 - 283
Target Start/End: Original strand, 24899145 - 24899364
Alignment:
| Q |
68 |
taactgcaacccaattaactcaaaaataatttatcatgatttgtaccctctactgtgtatttcttccgtttttccacaactgcta-aatggttctcaccc |
166 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |
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| T |
24899145 |
taactgcaacccaattaactaaaaaataatttatcttgatttgtaccctctactgtgtatctcttccgtttttccacaactggtacaatggttcacaccc |
24899244 |
T |
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| Q |
167 |
tttatctctcaata---gnnnnnnnncctgcatccctccataattttcttccattctacaatttcttcatcatttaatacttctgttatggccttcaatt |
263 |
Q |
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| T |
24899245 |
tttatctctcaatattgtttctttttcctgcatccctccataatttccttccattctacaatttcttcatcatttagtacttatgttatggccttcaatt |
24899344 |
T |
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| Q |
264 |
tagataagaaaattcggatc |
283 |
Q |
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|||||| | |||||| |||| |
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| T |
24899345 |
tagatagggaaattcagatc |
24899364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 24897913 - 24897976
Alignment:
| Q |
13 |
acaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaa |
76 |
Q |
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| T |
24897913 |
acaacaaaagaaacttaattatgacccaacccaataaaaaagaaacggaaagaaataaatgcaa |
24897976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 25401313 - 25401250
Alignment:
| Q |
13 |
acaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaa |
76 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
25401313 |
acaacaaaagaaacttaactatgacccaacccaataaaaaagaaacggaaagaaataaatgcaa |
25401250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 25497493 - 25497430
Alignment:
| Q |
13 |
acaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaa |
76 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
25497493 |
acaacaaaagaaacttaactatgacccaacccaataaaaaagaaacggaaagaaataaatgcaa |
25497430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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