View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_48 (Length: 295)
Name: NF14275_low_48
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 54687760 - 54688021
Alignment:
| Q |
16 |
aatattagtatataaccatcaggtttaagagggaagatattgcaacagaaaattgtgaacaagtttcgactttattattgctatatatttacacatataa |
115 |
Q |
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| T |
54687760 |
aatattagtaaataaccatcaggtttaagagggaagatattgcaacagaaaattgtgaacaagtttcgactttattattgctatatatttacacatataa |
54687859 |
T |
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| Q |
116 |
tttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactctaattttaat |
215 |
Q |
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| T |
54687860 |
tttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactctaattttaat |
54687959 |
T |
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| Q |
216 |
gagacgcctgaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttct |
277 |
Q |
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| T |
54687960 |
gagacgcctgaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttct |
54688021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 260
Target Start/End: Original strand, 54692412 - 54692586
Alignment:
| Q |
87 |
ttattattgctatatatttacacatataatttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgaga |
186 |
Q |
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| T |
54692412 |
ttattattactctacatttacacctataatttccatgtacaagtgtatctatattactacaaaattttgatcaccataaatattcatctaatggttgaga |
54692511 |
T |
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| Q |
187 |
atattaagaagtgaaactctaattttaatgagacgcct-gaatagaaactcaagcccttcttcaaggtcttgaat |
260 |
Q |
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| T |
54692512 |
ctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaat |
54692586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 108 - 277
Target Start/End: Original strand, 54699798 - 54699966
Alignment:
| Q |
108 |
acatataatttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactcta |
207 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||| | || ||||||||||| |||||||||||||| |||||| |
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| T |
54699798 |
acatataatttccatgtacaagtgtatctatatatctacaaaattttc-tccaaataaaagttcaactaatggttgaggatattaagaagtgagactcta |
54699896 |
T |
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| Q |
208 |
attttaatgagacgcctgaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttct |
277 |
Q |
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| T |
54699897 |
attttaatgagacgcctaaacaaaaactcaagcccttcttcaatgtcttgaaggcacgactctgttttct |
54699966 |
T |
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