View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_49 (Length: 294)
Name: NF14275_low_49
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 2239453 - 2239192
Alignment:
| Q |
15 |
cataggtggtgtaggtggatccgtgtatgtgtcttctatggtagtctctccgtcctcgtgaatggttgtccgactgaggaggttgatattcaaggagggt |
114 |
Q |
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| T |
2239453 |
cataggtggtgtaggtggatccgtgtatgtgtcttctatggtagtctctccgtcctcgtgaatggttgtccgactgaggaggttgatattcaaggagggt |
2239354 |
T |
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| Q |
115 |
tgaagcaatgcgaccctcttgctctgttccttttcttgttcgtggttgaggggctgagtggtttggtccggttagccgaagctacgagcttgttccatgg |
214 |
Q |
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| T |
2239353 |
tgaagcaatgcgaccctcttgctctgttccttttcttgttcgtggttgaggggctgagtggtttggtccggttagccgaagctacgagcttgttccatgg |
2239254 |
T |
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| Q |
215 |
ttttaaggtgagtaactcaggcctctcgatctctcatctttaatatgccaatgatactttat |
276 |
Q |
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| T |
2239253 |
ttttaaggtgagtaactcaggcctctcgatctctcatctttaatatgccaatgatactttat |
2239192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 29681078 - 29681134
Alignment:
| Q |
140 |
gttccttttcttgttcgtggttgaggggctgagtggtttggtccggttagccgaagc |
196 |
Q |
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| T |
29681078 |
gttccttttcttgttggtggttgaaggcctcagtggtttggttcggttggccgaagc |
29681134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 12845902 - 12845736
Alignment:
| Q |
18 |
aggtggtgtaggtggatccgtgtatgtgtcttctatggtagtctctccgtcctcgtgaatggttgtccgactgaggaggttgatattcaaggagggttga |
117 |
Q |
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| T |
12845902 |
aggtggtgtaggtggatccgtgcctgtgtttcttgtggtagtctctctgtcttagtgaatgggtgcccgactgaggaggttaatatccatagagggctta |
12845803 |
T |
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| Q |
118 |
agcaatgcgaccctcttgctctgttccttttcttgttcgtggttgaggggctgagtggtttggtccg |
184 |
Q |
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| T |
12845802 |
agcaaggggatccgctagccccgttccttttcctgttagtggtggagggcctaagcggtttggtccg |
12845736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 15272702 - 15272844
Alignment:
| Q |
135 |
gctctgttccttttctt-gttcgtggttgaggggctgagtggtttggtccggttagccgaagctacgagcttgttccatggttttaaggtgagtaactca |
233 |
Q |
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| T |
15272702 |
gctccgttcctttttttcgttggttgttgagggcatgagtggtttggtccggtcggccgaagctcgtggcttgtatcatggttttagggtgaggaactcg |
15272801 |
T |
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| Q |
234 |
ggcctctcgatctctcatctttaatatgccaatgatactttat |
276 |
Q |
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| T |
15272802 |
ggtctctcgatctctcatcttcagtatgcggatgataccttat |
15272844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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