View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_54 (Length: 272)
Name: NF14275_low_54
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34137345 - 34137607
Alignment:
| Q |
1 |
aaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcccttcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34137345 |
aaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttcca |
34137444 |
T |
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| Q |
101 |
atttacttccctaagttgtcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattg |
200 |
Q |
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|||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137445 |
atttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattg |
34137544 |
T |
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| Q |
201 |
agagttttggtctgtgttcttgctcttgaacaaaagctgggtctacttctcccatgatgatgt |
263 |
Q |
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| T |
34137545 |
agagttttggtctgtgttcttgctcttgaacaaaagctgggtctacttctcccatgatgatgt |
34137607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34133434 - 34133689
Alignment:
| Q |
1 |
aaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcccttcca |
100 |
Q |
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|||||||||| ||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||| |
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| T |
34133434 |
aaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttcca |
34133533 |
T |
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| Q |
101 |
atttacttccctaagttgtcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattg |
200 |
Q |
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| T |
34133534 |
atctccttcaccaagttttcaatatcagatggatttggaactgcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatgg |
34133633 |
T |
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| Q |
201 |
agagttttggtctgtgttcttgctcttgaacaaaagctgggtctacttctcccatg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
34133634 |
agagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatg |
34133689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 34141008 - 34141269
Alignment:
| Q |
1 |
aaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcccttcca |
100 |
Q |
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|||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| |
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| T |
34141008 |
aaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttcca |
34141107 |
T |
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| Q |
101 |
atttacttccctaagttgtcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattg |
200 |
Q |
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|| | ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| | |
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| T |
34141108 |
atctccttgactaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgaggg |
34141207 |
T |
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| Q |
201 |
agagttttggtctgtgttcttgctcttgaacaaaagctgggtctacttctcccatgatgatg |
262 |
Q |
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|||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||| ||||| |
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| T |
34141208 |
agagttttggtctgtgttctagctcttgaacgaaagttgggtctacctctcccatggtgatg |
34141269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34127161 - 34127416
Alignment:
| Q |
1 |
aaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcccttcca |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||| |||| ||||||| |||||||||| ||||| ||||| ||||| || |||||||| |||||| |
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| T |
34127161 |
aaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctcatggtttgtaacttgaaagaagccccattccttgcatgcacttcca |
34127260 |
T |
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| Q |
101 |
atttacttccctaagttgtcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattg |
200 |
Q |
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|| | |||| | ||| | |||||| ||||| ||| | ||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||| | |
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| T |
34127261 |
atcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaatattggtgagaggtcaatttcgggaattccttcggcttcaatgatgg |
34127360 |
T |
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| Q |
201 |
agagttttggtctgtgttcttgctcttgaacaaaagctgggtctacttctcccatg |
256 |
Q |
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| T |
34127361 |
atagttttggtctgtgttcttgctcttgaacaaatgctaagtccaattctcccatg |
34127416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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