View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_57 (Length: 268)
Name: NF14275_low_57
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_57 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 27923430 - 27923179
Alignment:
| Q |
17 |
actaagcatcttgaatactgaaagagttaatcgagaatacttagagaactattaacaatgtagtatctgaattaataggagataggaatataatatcatg |
116 |
Q |
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| T |
27923430 |
actaagcatcttgaatactgaaagagttaatcgagaatacttagagaactattaacaatgtagtatctgaattaataggagataggaatataatatcatg |
27923331 |
T |
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| Q |
117 |
tatagagtgtggctatttatatgctaattgagaacaagtacatggctacataatatccggtattgtattggtgtgtctagccctatacactgcattcatt |
216 |
Q |
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| T |
27923330 |
tatagagtgtggctatttatatgctaactgagaacaagtacatggctacataatatccggtattgtattggtgtgtctagccctatacactgcattcatt |
27923231 |
T |
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| Q |
217 |
aatgtcattatatgatatgtcaattacttccatctcattaggcaaaaagctc |
268 |
Q |
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| T |
27923230 |
aatgtcattatatgatatgtcaattacttccatctcattaggcaaaaagctc |
27923179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 27929805 - 27929670
Alignment:
| Q |
17 |
actaagcatcttgaatactgaaagagttaatcgagaatacttagagaactattaacaatgtagtatctgaattaataggagataggaatataatatcatg |
116 |
Q |
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| T |
27929805 |
actaagcatcttgaatattgaaagagttaatagtgattaattagagaactattgacaaggtagaatctgaattgttaagggattgcaatataatattatg |
27929706 |
T |
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| Q |
117 |
tatagagtgtggctatttatatgctaattgagaaca |
152 |
Q |
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| T |
27929705 |
tttagagtgtggctttttatatactaattgagaaca |
27929670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 27939395 - 27939321
Alignment:
| Q |
176 |
gtattgtattggtgtgtctagccctatacactgcattcattaatgtcattatatgatatgtcaattacttccatc |
250 |
Q |
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| T |
27939395 |
gtatggtattggtggatctagccctattcattgcattcatttatgccattatatgataggtcaattaattccatc |
27939321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 27929658 - 27929597
Alignment:
| Q |
191 |
gtctagccctatacactgcattcattaatgtcattatatgatatgtcaattacttccatctc |
252 |
Q |
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| T |
27929658 |
gtctagccctgtacactgcactcatttatgccactatatgataggtctattacttccatctc |
27929597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 27895947 - 27895882
Alignment:
| Q |
196 |
gccctatacactgcattcattaatgtcattatatgatatgtcaattacttccatctcattaggcaaaaa |
264 |
Q |
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| T |
27895947 |
gccctatacactgcatttattgat---attattcgataggtcaattacttccatctcattagccaaaaa |
27895882 |
T |
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