View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_60 (Length: 257)
Name: NF14275_low_60
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 10243221 - 10243000
Alignment:
| Q |
7 |
tcgaagaatatcaaacatgtcataattatattggtccatctaagggtggaaccaaacatatatactaattgatcatagaaactaagttaatgaaaagttg |
106 |
Q |
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| T |
10243221 |
tcgaaaaaaatcaaacatgtcataattatattgttccttctaagggtggaaccaaacatatatactaattgatctaagaaac-aagttaatgaaaagttg |
10243123 |
T |
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| Q |
107 |
atnnnnnnngtttacgtatcatgcaannnnnnnnnnngtaaaaatcacgtgtcatgtaactttagtcgggattaataaaaatctacagcaaaggatagag |
206 |
Q |
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| T |
10243122 |
at-aaaaaagtttacgtatcatgtaattttttttttggt---aatcacgtgtcatgtaactttagtcgggattaataaaaatctacagcaaaggatagag |
10243027 |
T |
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| Q |
207 |
nnnnnnnccacataagcattcctaaaaa |
234 |
Q |
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||||||||||||||||||||| |
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| T |
10243026 |
-aaaaaaccacataagcattcctaaaaa |
10243000 |
T |
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