View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_61 (Length: 253)
Name: NF14275_low_61
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 41966459 - 41966683
Alignment:
| Q |
13 |
tgaaactaaatatacaccaactctattaactttatctctgttgaaattattatataggttgctaacctgagctatgcaagaaaagatttaggagactatt |
112 |
Q |
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| T |
41966459 |
tgaaactaaatatacaccaactctattaactttatctctgttgaaattattatataggttgctaacctgagctatgcaagaaaagatttaggagactatt |
41966558 |
T |
|
| Q |
113 |
ggaagaataagatgaatgaacaacctatgcctgaagcaattaaaaaccttattcaagttccaaaagcattaggtgaaggaaaagaagatcattctcttac |
212 |
Q |
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| T |
41966559 |
ggaagaataagatgaatgaacaacctatgcctgaagcaattaaaaaccttattcaagttccaaaagcattagatgaaggaaaagaagatcattcttttac |
41966658 |
T |
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| Q |
213 |
taccgactttgatgtaaatcctaat |
237 |
Q |
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| T |
41966659 |
taccgactttgatgtaaatcctaat |
41966683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 1227849 - 1228044
Alignment:
| Q |
38 |
ttaactttatctctgttgaaattattatataggttgctaacctgagctatgcaagaaaagatttaggagactattggaagaataagatgaatgaacaacc |
137 |
Q |
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| T |
1227849 |
ttaactttatctctgttgaaatga----ataggttgctaacatgagctatgcaagaaaagatctaggagacctttggaagaataagatgaataagcaacc |
1227944 |
T |
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| Q |
138 |
tatgcctgaagcaattaaaaaccttattcaagttccaaaagcattaggtgaaggaaaagaagatcattctcttactaccgactttgatgtaaatcctaat |
237 |
Q |
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| T |
1227945 |
tatgcctgaagcaattaaaaactttattcaagttccaaaagcattaggtgaaggaaaagaagatcattcttttactaccgactttgatgtaaatcctaat |
1228044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 26235756 - 26235689
Alignment:
| Q |
85 |
tatgcaagaaaagatttaggagactattggaagaataagatgaatgaacaacctatgcctgaagcaat |
152 |
Q |
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|||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
26235756 |
tatgcaagaaaagacttgggaggttattggaagaatatgatgaatgaccaacctatgcctgaagcaat |
26235689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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