View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_63 (Length: 243)
Name: NF14275_low_63
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45530911 - 45531151
Alignment:
| Q |
1 |
tattagttaaaattataagtaaataaattattcatcaaaaagtcattattttgattcaaatgtattaaaacgcacccaaagagccctagagatggtaagg |
100 |
Q |
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| T |
45530911 |
tattagttaaaattataagtaaataaattattcatcaaaaagtcattattttgattcaaatgtattaaaacgcacccaaagagccctagagatggtaagg |
45531010 |
T |
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| Q |
101 |
ggtcctttccaagttaaccagagatcttgagcttaaattcaaccttac---atctacactttgacaaaataggtgttgttgacgtcaaaacaagagggga |
197 |
Q |
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| T |
45531011 |
ggtcctttccaaattaatcagagatcttgagctcaaattcaaccttacttgatctacacttttacaaaataggtgttgttgacgtcaaaactagagggga |
45531110 |
T |
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| Q |
198 |
gagaagacatattgcacgtgcctcactttgaggtttatttt |
238 |
Q |
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| T |
45531111 |
gagaagacatattgcacgtgcctcactttgaggtttatttt |
45531151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 45524624 - 45524673
Alignment:
| Q |
20 |
taaataaattattcatcaaaaagtcattattttgattcaaatgtattaaa |
69 |
Q |
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| T |
45524624 |
taaataaattatttattaaaaagtcattgtttcgattcaaatgtattaaa |
45524673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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