View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_64 (Length: 237)
Name: NF14275_low_64
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 980560 - 980781
Alignment:
| Q |
1 |
aaaattgtagaagtgaatctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattcacaactgtata |
100 |
Q |
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| T |
980560 |
aaaattgtataagtgagtctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattcacaactgtata |
980659 |
T |
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| Q |
101 |
ttttctaggtgccaaggaaaagccaatgtgcagggttgtttgtgaaaacaataacgaatatgtttttaatttacaaagtgtaagtcaaatatatacaata |
200 |
Q |
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| T |
980660 |
ttttctaggtgccagggaaaagccaatgtgcagggttgtttgtgaaaacaacaactaatatgtttttaatttacaatgtgtaagttaaatatatacaata |
980759 |
T |
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| Q |
201 |
tgtaatatcaaacttcagaggt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
980760 |
tgtaatatcaaacttcagaggt |
980781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27146673 - 27146762
Alignment:
| Q |
1 |
aaaattgtagaagtgaatctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattca |
90 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146673 |
aaaattgtagaagtgagtctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattca |
27146762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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