View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_71 (Length: 210)
Name: NF14275_low_71
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 46098348 - 46098526
Alignment:
| Q |
17 |
agtttaggggttgaaaggtggttttgatagaagtaaagcaactccatataacttttggtttgagtgaatgaaattcaaacataggtcattttacttcaaa |
116 |
Q |
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| T |
46098348 |
agtttaggggttgaaaggtggttttgatagaagtaaagcaactccatataacttttggtttgagtggatgaaattcaaacataggtcattttacttcaaa |
46098447 |
T |
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| Q |
117 |
tatactcgtaaccaaatcaaatttacaaaatcaagtattaccaaataaaataattttaggctgaatggtgaaaattctt |
195 |
Q |
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| T |
46098448 |
tatactcgtaaccaaatcaaatttacaaaatcaagtattaccaaataaaataattttaggctgaatggtgaaaattctt |
46098526 |
T |
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Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 11760760 - 11760828
Alignment:
| Q |
76 |
ttgagtgaatgaaattcaaacataggtcattttacttcaaatatactcgtaaccaaatcaaatttacaa |
144 |
Q |
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| T |
11760760 |
ttgagtggatgaaattcaaacataggtcattttacttcaaatatactcgtaaccaaatcaaatttacaa |
11760828 |
T |
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