View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14275_low_9 (Length: 604)
Name: NF14275_low_9
Description: NF14275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14275_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 53870187 - 53870442
Alignment:
| Q |
57 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
156 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870187 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
53870286 |
T |
|
| Q |
157 |
cttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870287 |
cttaatcttgagaagaaaatattgtttaaattcaacttataccattttttttatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
53870386 |
T |
|
| Q |
257 |
tctattgtgagaagctagtggacggtgg-ggtgatagaggatactgacagatagtt |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
53870387 |
tctattgtgagaagctggtggacggtggaggtgatagaggatactgacagatagtt |
53870442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 351 - 480
Target Start/End: Original strand, 53870484 - 53870603
Alignment:
| Q |
351 |
aattgttttcaaattgctttaaaataaatagaattgttttcacaacctatagcaactgccacgtgccttgaaaaaagtcacttttctatggtgggaaaaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53870484 |
aattgttttcaaattgctttaaaataaatataattgttttcacaacc----------gccacgtgcctggaaaaaagtcacttttctatggtgggaaaaa |
53870573 |
T |
|
| Q |
451 |
ttttcattgttccaggttaaatgccaccat |
480 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
53870574 |
atttcattgtcccaggttaaatgccaccat |
53870603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 40727497 - 40727752
Alignment:
| Q |
57 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727497 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataagaagataatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
40727596 |
T |
|
| Q |
157 |
cttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40727597 |
cttaatcttgagaagaaaatattgtttaaattcaacttatactattttttttatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
40727696 |
T |
|
| Q |
257 |
tctattgtgagaagctagtggacggt-ggggtgatagaggatactgacagatagtt |
311 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
40727697 |
tctattgtgagaagctggtggacggtgggggtgatagaggatagtgacagatagtt |
40727752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 5277962 - 5278217
Alignment:
| Q |
57 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5277962 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaatattaagattatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
5278061 |
T |
|
| Q |
157 |
cttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5278062 |
cttaatcttgagaagaaaatattgtttaaattcaacttatatcattttttttatacaacttctccagaaaataattttgcaagagcaaatgaaagaaaat |
5278161 |
T |
|
| Q |
257 |
tctattgtgagaagctagtggacggtgg-ggtgatagaggatactgacagatagtt |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5278162 |
tctattgtgagaagctggtggacggtggaggtgatagaggatactgacagatagtt |
5278217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 40727790 - 40727917
Alignment:
| Q |
351 |
aattgttttcaaattgctttaaaataaatagaattgttttcacaacctatagcaactgccacgtgccttgaaaaaagtcacttttctatggtgggaaaaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40727790 |
aattgttttcaaattgctttaaaataaatagaattgttttcacaacctgtagcaactgccacgtgcctggaaaaaagtcacttttctatggtgggaaaaa |
40727889 |
T |
|
| Q |
451 |
ttttcattgttccaggttaaatgccacc |
478 |
Q |
| |
|
||||||||| |||| |||||||||||| |
|
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| T |
40727890 |
atttcattgtcccagattaaatgccacc |
40727917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 5278255 - 5278372
Alignment:
| Q |
351 |
aattgttttcaaattgctttaaaataaatagaattgttttcacaacctatagcaactgccacgtgccttgaaaaaagtcacttttctatggtgggaaaaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
5278255 |
aattgttttcaaattgctttaaaataaatagaattgttttcacaac----------tgccacgtgcctggaaaaaagtcacttttttatggtgggaaaaa |
5278344 |
T |
|
| Q |
451 |
ttttcattgttccaggttaaatgccacc |
478 |
Q |
| |
|
||||||||| ||||||||||||||||| |
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|
| T |
5278345 |
atttcattgtcccaggttaaatgccacc |
5278372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 57 - 280
Target Start/End: Complemental strand, 624952 - 624729
Alignment:
| Q |
57 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
624952 |
aaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaacgaacaaagcagtcaccaccaatgactttgaaaa |
624853 |
T |
|
| Q |
157 |
cttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
624852 |
cttaatcttgagaagaaaatattgtttaaattcaacttataccattttttttatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaat |
624753 |
T |
|
| Q |
257 |
tctattgtgagaagctagtggacg |
280 |
Q |
| |
|
|||||||||||||||| ||||||| |
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|
| T |
624752 |
tctattgtgagaagctggtggacg |
624729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 624477 - 624425
Alignment:
| Q |
426 |
agtcacttttctatggtgggaaaaattttcattgttccaggttaaatgccacc |
478 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
624477 |
agtcacttttctatggtgggaaaaaatttcattgtcccattttaaatgccacc |
624425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 380
Target Start/End: Complemental strand, 624671 - 624642
Alignment:
| Q |
351 |
aattgttttcaaattgctttaaaataaata |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
624671 |
aattgttttcaaattgctttaaaataaata |
624642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33483176 - 33483240
Alignment:
| Q |
1 |
tggttttgagattactttttcaaatctgatcatacccttcaacaaatatgcttataaaatgttat |
65 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33483176 |
tggttttgagattactttttcaattctgatcatacccttcaacaaatttgcttataaaatgttat |
33483240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 567
Target Start/End: Original strand, 765462 - 765501
Alignment:
| Q |
528 |
ataaaggtaaaaacaatgtggggacgaatttaattttgtt |
567 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
765462 |
ataaagggaaaaacaatgtggggacgaatttaattttgtt |
765501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 448
Target Start/End: Original strand, 51976109 - 51976204
Alignment:
| Q |
354 |
tgttttcaaattgctttaaaataaatagaattgttttcacaacctatagcaactgccacgtgccttgaaaaaa-gtcacttttctatggtgggaaa |
448 |
Q |
| |
|
||||||| ||| |||||||||||| | |||||||||||||| | |||||||||||| ||||| ||||||| | |||||| ||||||||||||| |
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|
| T |
51976109 |
tgttttcttattactttaaaataaaaacaattgttttcacaaattgcagcaactgccacctgcctggaaaaaatggcactttcctatggtgggaaa |
51976204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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