View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14276_high_1 (Length: 258)
Name: NF14276_high_1
Description: NF14276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14276_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 9416276 - 9416061
Alignment:
| Q |
18 |
atattacaacatgttttggttttcaaaatattttacgacacaacttctattcctcgatgttaactggacttaacaaaattaacaataaactggaaagttt |
117 |
Q |
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| T |
9416276 |
atatttcaacatgttttggttttcaaaatattttatgacacaacttctattcctcgatgttaactggacttaacaaaattaacaataaactggaaagttt |
9416177 |
T |
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| Q |
118 |
tccttcatttttcattcatcatcttctcatctgaaacacaacaaaaaccttacatattgcggcatacattgaccaattcatttaattgcattaaagtatt |
217 |
Q |
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| T |
9416176 |
tccttcatt-----------atcttctcatctgaaacacaacaaaaactttacatattgcggcatacattgaccaattcatttaattgcattaaagtatt |
9416088 |
T |
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| Q |
218 |
aaaacccaaatttgtgaatccttaatttt |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9416087 |
--aacccaaatttgtgaatccttaatttt |
9416061 |
T |
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