View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14276_low_1 (Length: 393)
Name: NF14276_low_1
Description: NF14276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14276_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 17107629 - 17107254
Alignment:
| Q |
1 |
ggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17107629 |
ggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttcc |
17107530 |
T |
|
| Q |
101 |
atctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgct |
200 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17107529 |
atcagaagccaccaatagcaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgct |
17107430 |
T |
|
| Q |
201 |
ttgtctccaattttctttacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatgg |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17107429 |
ttgtctccaattttcttcacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatgg |
17107330 |
T |
|
| Q |
301 |
caaaattcatcattgatttaagggataatgcacaatacttctcttcccctatagcagattgacgtctacaatagtt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17107329 |
caaaattcatcattgatttaagggataatgcacaatacttctcttcccctatagcagatggacgtatacaatagtt |
17107254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 355
Target Start/End: Original strand, 17117206 - 17117555
Alignment:
| Q |
6 |
gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg |
105 |
Q |
| |
|
||||| |||||||||||||||| | ||| ||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| | |
|
|
| T |
17117206 |
gttcctggcttgactttgagaaccttatagagatgatcaggattcatacctcttgtatcatggtgacaaatagtcactgccttagctttagttccatcag |
17117305 |
T |
|
| Q |
106 |
aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| || | ||||||||||| || |||||||| ||| || ||||| |
|
|
| T |
17117306 |
aagccaccaatggcaccatgtaaactgttgttgcattaacttggtgacaagaaaatataatatttttgaaattcattcgatgacacaacaccgcgttgtc |
17117405 |
T |
|
| Q |
206 |
tccaattttctttacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatggcaaaa |
305 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
17117406 |
tccaattttcttcacttcgtccaccctatattgatcttggttttgggcaaaggagcttgtaattaccttaatatttgttccaagctttgatatggcaaaa |
17117505 |
T |
|
| Q |
306 |
ttcatcattgatttaagggataatgcacaatacttctcttcccctatagc |
355 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
17117506 |
ttcatcattgattttagggatagtgcacaatacttatcttctcctatagc |
17117555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 54 - 376
Target Start/End: Complemental strand, 17004394 - 17004072
Alignment:
| Q |
54 |
cctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggc |
153 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| | |
|
|
| T |
17004394 |
cctcttgtatcatggtggcagacagttagtgccttagctttggttccatctaaagccaccaatggcaccatgtaagttgtagttgcattaacttggtgac |
17004295 |
T |
|
| Q |
154 |
aataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtctccaattttctttacttcatccaccttatattgatcttggttttgggc |
253 |
Q |
| |
|
|||||||||| | | ||||||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| |||||| || | |||| ||| |
|
|
| T |
17004294 |
aataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaatttttttcacttcatccaccacatattggtccttatttttggc |
17004195 |
T |
|
| Q |
254 |
aaaggaacttgaaatcaccttaatattagttccaagctttgatatggcaaaattcatcattgatttaagggataatgcacaatacttctcttcccctata |
353 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||||| |||||||||| | |||||||| ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
17004194 |
aaaggaacttgaaatcaccttaatgttggtcccaagctttgaaatggcaaaatctaccattgattctagggatagtgcacaatacttatcttctcctata |
17004095 |
T |
|
| Q |
354 |
gcagattgacgtctacaatagtt |
376 |
Q |
| |
|
|| ||| | | |||||||||||| |
|
|
| T |
17004094 |
gctgatgggcttctacaatagtt |
17004072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 6 - 355
Target Start/End: Original strand, 17986454 - 17986803
Alignment:
| Q |
6 |
gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| || |||||||| || || ||||||||||| |||||||||||||| | |
|
|
| T |
17986454 |
gttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtggcatattgttagtgccttcgctttagttccatcag |
17986553 |
T |
|
| Q |
106 |
aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc |
205 |
Q |
| |
|
| ||||| || | || ||||| || ||||||||| |||||||||||||||||||| | | | |||||| | | ||||||||||||| |||||||| |
|
|
| T |
17986554 |
aggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgatcgaaatttagtttatgacacatcacggctttgtc |
17986653 |
T |
|
| Q |
206 |
tccaattttctttacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatggcaaaa |
305 |
Q |
| |
|
|||||||||||| ||||| | || ||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
17986654 |
tccaattttcttcacttcctgtactatatattggtcttggttttgtgcaaaggaacttgaaatcaacttaatattttttccaagctttgaaatggcgaaa |
17986753 |
T |
|
| Q |
306 |
ttcatcattgatttaagggataatgcacaatacttctcttcccctatagc |
355 |
Q |
| |
|
| |||||||||| |||| | |||| |||||||| | ||| |||||||| |
|
|
| T |
17986754 |
tctatcattgattctagggttgatgcgcaatacttgtgttctcctatagc |
17986803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 6 - 352
Target Start/End: Original strand, 17956292 - 17956638
Alignment:
| Q |
6 |
gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg |
105 |
Q |
| |
|
||||||||||| |||||||||| || ||||| |||| ||||| ||| |||| |||||||||||||| || ||||||||||||| ||| |||||||| | |
|
|
| T |
17956292 |
gttccaggcttaactttgagaacatcgtaaagcacattaggatccatacctcgagtatcatggtgacagattgttagtgccttagatttggttccatcgg |
17956391 |
T |
|
| Q |
106 |
aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc |
205 |
Q |
| |
|
| |||||||||| ||||||||| |||||| ||||| |||||||||||||| |||| | | ||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
17956392 |
atgccaccaatggaaccatgtaagttgttgtcgcattgacttggtggcaatagaatagaacttttttaaaattcaatctatggcacatcactgcgttgtc |
17956491 |
T |
|
| Q |
206 |
tccaattttctttacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatggcaaaa |
305 |
Q |
| |
|
||| ||||| || ||||| |||||| |||||| || || |||| | |||||||||||| ||||| || ||||| ||||||||||||| || |||||| |
|
|
| T |
17956492 |
tcctattttattcacttcttccaccacatattggtcatgatttttagaaaaggaacttgacatcactttgatattctttccaagctttgaaattgcaaaa |
17956591 |
T |
|
| Q |
306 |
ttcatcattgatttaagggataatgcacaatacttctcttcccctat |
352 |
Q |
| |
|
| ||||||||||| || ||| |||||||| || ||||||||||| |
|
|
| T |
17956592 |
tccatcattgattctagtgatggtgcacaatgtttgtcttcccctat |
17956638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 6 - 355
Target Start/End: Original strand, 17945294 - 17945643
Alignment:
| Q |
6 |
gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg |
105 |
Q |
| |
|
|||||||||||||||| ||||| |||||| || | || ||||| ||| ||||||||||||||||| || |||||||||||||| | |||||||||||| | |
|
|
| T |
17945294 |
gttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgccttggatttagttccatcag |
17945393 |
T |
|
| Q |
106 |
aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc |
205 |
Q |
| |
|
| |||||||||| ||||||||| ||||| || || | ||||||||||| ||| | | | ||| | ||||| |||||||||||||||||| ||||| |
|
|
| T |
17945394 |
aggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaacctttttaagattcattctatgacacatcactgcgttgtc |
17945493 |
T |
|
| Q |
206 |
tccaattttctttacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatggcaaaa |
305 |
Q |
| |
|
||| ||||| | ||||| |||||| ||||||| |||||| |||| | ||| |||||||| ||||| |||||||| ||||||||||||| ||||| ||| |
|
|
| T |
17945494 |
tcctatttttctcacttcctccaccatatattggtcttggctttgagaaaatgaacttgacatcactttaatattctttccaagctttgaaatggcgaaa |
17945593 |
T |
|
| Q |
306 |
ttcatcattgatttaagggataatgcacaatacttctcttcccctatagc |
355 |
Q |
| |
|
| ||||||||||| || || ||||||| | |||||||| |||||||| |
|
|
| T |
17945594 |
tccatcattgattctagtgaatatgcacagtgtttctcttctcctatagc |
17945643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17999236 - 17999458
Alignment:
| Q |
1 |
ggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttcc |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||| || | || |||||||| |||||||| |||||||||||| || | ||| ||| ||||| |||| |
|
|
| T |
17999236 |
ggatagttcctggcttgactttgagaacttcatcgagcaaattcggattcatacctcttgtgtcatggtgacaagcagccaatgcattaactttacttcc |
17999335 |
T |
|
| Q |
101 |
atctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgct |
200 |
Q |
| |
|
||| || |||| ||| | ||||||||| ||||| |||||| |||||||| ||||||||||| | | | |||||||| || ||||||||| ||| || |
|
|
| T |
17999336 |
atcagaggccaacaaagggaccatgtaagttgttgatgcattcacttggtgacaataaaatacaactttctcgaaattcattcgatgacacattactcct |
17999435 |
T |
|
| Q |
201 |
ttgtctccaattttctttacttc |
223 |
Q |
| |
|
|||||| |||||||| ||||||| |
|
|
| T |
17999436 |
ttgtctgcaattttccttacttc |
17999458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 17258047 - 17258323
Alignment:
| Q |
1 |
ggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttcc |
100 |
Q |
| |
|
||||||| ||||| | |||||| ||| ||||||||| | |||| |||||| |||||||| |||||||| |||| ||||| |||||||||||| ||| |
|
|
| T |
17258047 |
ggatggtaccaggttcgacttttagagcttcataaagcaactcagcattcatgcctcttgtgtcatggtggcaaacagttaaggccttagctttacctcc |
17258146 |
T |
|
| Q |
101 |
atctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgct |
200 |
Q |
| |
|
||| | || |||||||| |||| ||| | |||||||| | ||||||||||||| ||||| | | || ||||||||||||||||||||||||||| |
|
|
| T |
17258147 |
atcgggggctaccaatgataccacataagcagttgttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatctatgacacatcactgca |
17258246 |
T |
|
| Q |
201 |
ttgtctccaattttctttacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaat |
277 |
Q |
| |
|
|||||||||| ||| || ||||| |||||| |||||| || |||||| | |||||| |||||||||| ||||||| |
|
|
| T |
17258247 |
ttgtctccaacttttttcacttcctccaccacatattggtcctggtttacgccaaaggtacttgaaatcgccttaat |
17258323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 34241456 - 34241423
Alignment:
| Q |
177 |
ttcaatctatgacacatcactgctttgtctccaa |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
34241456 |
ttcaacctatgacacatcactgctttgtctccaa |
34241423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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