View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14276_low_5 (Length: 223)
Name: NF14276_low_5
Description: NF14276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14276_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 39951336 - 39951132
Alignment:
| Q |
1 |
agaagcttgcaaaattgttaaagttgagccattcaactctgagaagaaaagaatgggagtagttgtggagcaacctgatggaagtttaagagctcattgc |
100 |
Q |
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| T |
39951336 |
agaagcttgcaaaattgttaaagttgagccattcaactctgagaagaaaagaatgggagtagttgtggagcaacctgatggaagtgtaagagctcattgc |
39951237 |
T |
|
| Q |
101 |
aaaggtgcttctgaaataattctggcagcttgtgacaaagttattgacttgaacggcgatgttgtttctcttgatggagaatcaactaattatcttaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39951236 |
aaaggtgcttctgaaataattctggcagcttgtgacaaagttattgacttgaacggcgatgttgttgctcttgatggagaatcaactaattatcttaaca |
39951137 |
T |
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| Q |
201 |
gtatt |
205 |
Q |
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||||| |
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| T |
39951136 |
gtatt |
39951132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 5419444 - 5419636
Alignment:
| Q |
3 |
aagcttgcaaaattgttaaagttgagccattcaactctgagaagaaaagaatgggagtagttgtggagcaacctgatggaagtttaagagctcattgcaa |
102 |
Q |
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|||| |||||| |||||||||||||||| ||||||||| |||||||||||||| | ||| ||||||| ||| |||| ||||||||||||| || || |
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| T |
5419444 |
aagcatgcaaacttgttaaagttgagccgttcaactctactaagaaaagaatgggtgcagtggtggagctccctagtggaggtttaagagctcactgtaa |
5419543 |
T |
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| Q |
103 |
aggtgcttctgaaataattctggcagcttgtgacaaagttattgacttgaacggcgatgttgtttctcttgatggagaatcaactaattatct |
195 |
Q |
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|||||||||||||||| |||| || ||||||||||||||| | | | |||||||| ||||| | ||||||| ||||||||||||| |||| |
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| T |
5419544 |
aggtgcttctgaaatagttcttgctgcttgtgacaaagttctcaattcaaacggcgaggttgtcccacttgatgaagaatcaactaatcatct |
5419636 |
T |
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