View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14277_high_1 (Length: 606)
Name: NF14277_high_1
Description: NF14277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14277_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 262 - 599
Target Start/End: Complemental strand, 55573883 - 55573546
Alignment:
| Q |
262 |
cgtatatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacata----aaaaccaaaagatgtcgtatttg |
357 |
Q |
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| T |
55573883 |
cgtatatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacatacataaaaaccaaaagatgtcgtatttg |
55573784 |
T |
|
| Q |
358 |
atgtcaaaatatcatttcttcaaaataaggaaccttgtgatttcctgtgaaatccaaaccaacacaagaaaataaaccaaaaaagagtattatgacaaga |
457 |
Q |
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| T |
55573783 |
atgtcaaaatatcatttcttcaaaataaggaaccttgtgatttcctgtgaaatctaaaccaacacaagaaaataaaccaaaaaagagtattatgacaaga |
55573684 |
T |
|
| Q |
458 |
agtggacacaggaattaattaattaattaaacctttctgagataaaaatagttaattaattacctgcactatgttaggatgaaagagacgtgagagtaaa |
557 |
Q |
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| T |
55573683 |
agtggacacaggaattaattaa----ttaaacctttctgagataaaaatagttaattaattacctgcactatgttaggatgaaagagacgtgagagtaaa |
55573588 |
T |
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| Q |
558 |
gcaacttcagacttgaattgctgttctagcaatgttcttctc |
599 |
Q |
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| T |
55573587 |
gcaacttcagacttgaattgctgttctagcaatgttcttctc |
55573546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 55574140 - 55573930
Alignment:
| Q |
6 |
agtatcttgtgttgaa-ttacctactttactctaaagtctaaggaaaattagattcatgaatatgatcaaatatagacataagttagtgatgtaacataa |
104 |
Q |
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| T |
55574140 |
agtatcttgtgttgaaattacctacttaactctaaagtctaaggaaaattagattcatgaatatgatcaaatatagacataagttagtgatgtaacataa |
55574041 |
T |
|
| Q |
105 |
tactggcaaacatgttgcatccgtaaaaacatgacacaaaagtaaagaaatttgacatcaagttggtattaaattttcccccactaaagtggtaagtggt |
204 |
Q |
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| T |
55574040 |
tactgccaaacatgttgcatccgtaaaaacatgacacaaaagtaaagaaatttgacatcaagttggtattaaattttcccccactaaagtggtaagtggt |
55573941 |
T |
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| Q |
205 |
tgtgagtcttt |
215 |
Q |
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| T |
55573940 |
tgtgagtcttt |
55573930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 379 - 518
Target Start/End: Complemental strand, 33035869 - 33035731
Alignment:
| Q |
379 |
aaaataaggaaccttgtgatttcctgtgaaatccaaaccaacacaagaaaataaaccaaaaaagagtattatgacaagaagtggacacaggaattaatta |
478 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||| ||||| |||| |
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| T |
33035869 |
aaaataaggaacctcgtgatttcctttgaaatccaaaccaacacaataaaataaaacaaaaaagactattaggacaagaagtggacacaagaattcatta |
33035770 |
T |
|
| Q |
479 |
attaattaaacctttctgagataaaaatagttaattaatt |
518 |
Q |
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| T |
33035769 |
attaattaaacctttctgagat-aaaatagttaattaatt |
33035731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 20809151 - 20809076
Alignment:
| Q |
268 |
tgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacataaaaaccaaa |
343 |
Q |
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| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacacacaaaaaccaaa |
20809076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 16560792 - 16560857
Alignment:
| Q |
265 |
atatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaataca |
330 |
Q |
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| T |
16560792 |
atatatttatctttatctctcttttactttttatcatatacaacttatatgagtttaaaaaataca |
16560857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 6527418 - 6527458
Alignment:
| Q |
303 |
tacaacttacgtgaatttaaaaaatacacataaaaaccaaa |
343 |
Q |
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| T |
6527418 |
tacaacttgcatgcatttaaaaaatacacataaaaaccaaa |
6527458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 10313839 - 10313896
Alignment:
| Q |
286 |
tgttactttttatctcttacaacttacgtgaatttaaaaaatacacataaaaaccaaa |
343 |
Q |
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||||||||||||||| |||||||||| ||||||| |||| |||||| ||||| |||| |
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| T |
10313839 |
tgttactttttatcttgtacaacttacatgaatttcaaaattacacacaaaaatcaaa |
10313896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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