View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14277_high_11 (Length: 250)
Name: NF14277_high_11
Description: NF14277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14277_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 48698427 - 48698184
Alignment:
| Q |
1 |
tctaatcaacattcattctttacaacatcacgtgtttgcagccattttagaattttccaaattcgttgtggaacttgctctcctataacataactcctac |
100 |
Q |
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| T |
48698427 |
tctaatcaacattcattctttacaacatcacatgtttgcagccattttagaattttccaaattcgttgtggaacttgctctcctataacataactcctac |
48698328 |
T |
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| Q |
101 |
atgttgtatttttgggtgcaaaacatactag-nnnnnnnatccatatagaatttcatataactattaagagaaatagttcatatagtaaataaatgcaat |
199 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48698327 |
atgttgtatttttgggtgcaaaacatactagttttttttatccatatagaatttcatataactattaagagaaaaagttcatatagtaaataaatgcaat |
48698228 |
T |
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| Q |
200 |
aaaatatagattccgattgatgttaacagtactgattcttctca |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48698227 |
aaaatatagattccgattgatgttaacagtactgattcttctca |
48698184 |
T |
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