View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14277_high_3 (Length: 420)

Name: NF14277_high_3
Description: NF14277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14277_high_3
NF14277_high_3
[»] chr4 (22 HSPs)
chr4 (1-280)||(6738089-6738367)
chr4 (4-202)||(6541756-6541954)
chr4 (92-408)||(6748533-6748858)
chr4 (89-223)||(6503827-6503961)
chr4 (111-202)||(6792068-6792159)
chr4 (111-200)||(6811523-6811612)
chr4 (89-200)||(6502599-6502710)
chr4 (111-200)||(6593461-6593550)
chr4 (111-198)||(6832044-6832131)
chr4 (111-200)||(6627110-6627199)
chr4 (114-202)||(6522906-6522994)
chr4 (92-200)||(6550723-6550831)
chr4 (111-223)||(6646747-6646859)
chr4 (281-415)||(6811702-6811836)
chr4 (111-200)||(6769229-6769318)
chr4 (346-415)||(6626886-6626955)
chr4 (343-407)||(6502383-6502447)
chr4 (345-409)||(6503632-6503696)
chr4 (337-409)||(6792312-6792384)
chr4 (346-409)||(6647009-6647072)
chr4 (343-409)||(6665419-6665485)
chr4 (361-409)||(6832300-6832348)
[»] scaffold0729 (2 HSPs)
scaffold0729 (111-202)||(6470-6561)
scaffold0729 (337-409)||(6245-6317)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 6738089 - 6738367
Alignment:
Q  1 tattatacaggaacggaggtgaacatataacacaggtagttaaatgtgctactcttattgtaagcaagaaaagagcctcgttccatatagagagcataca 100  Q
    |||||||||||||| | ||| |||| |||||| | |||||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||||||||    
T  6738089 tattatacaggaacag-ggtaaacagataacaaatgtagttaaatgtgctactcttatgataagcaagaaaagagcctcattccatatggagagcataca 6738187  T
Q  101 ctctcgtgcccaagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 200  Q
     |||||||||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6738188 ttctcgtgcccaagatgtgattcaactattgaaacaatcaaaatcttctctcctgctagggatatgggggatgacagggattggtaaatcaaccattgcc 6738287  T
Q  201 aacgaaatttatactcagattgggaacttttttgaggacaaatgctacctagaatatgttaagggagcatttcatactct 280  Q
    ||||  |||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||    
T  6738288 aacgccatttatactcggattgggaacttttttgaggacaaatgctgcctataatatgtcaagggagcatttcgtactct 6738367  T

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Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 6541954 - 6541756
Alignment:
Q  4 tatacaggaacggaggtgaacatataacacaggtagttaaatgtgctactcttattgtaagcaagaaaagagcctcgttccatatagagagcatacactc 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6541954 tatacaggaacagaggtgaacatataacacatgtagttaaatgtgctactcttattgtaagcaagaaaagagcctcgttccatatagagagcatacactc 6541855  T
Q  104 tcgtgcccaagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||| ||||||||||| |||||    
T  6541854 tcgtgcccaagatgtgattcaactattgaaacaatcaaaatgtcctcttttagtagggatatgggggatgacagggattggcaaatcaaccatcgccaa 6541756  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 408
Target Start/End: Original strand, 6748533 - 6748858
Alignment:
Q  92 gagcatacactctcgtgcccaagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatca 191  Q
    ||||||| | ||||||||||||||||||||||||||||| |||| ||| ||||  ||||||||||| ||||||||||||||| ||||| |||||||||||    
T  6748533 gagcataaattctcgtgcccaagatgtgattcaactattaaaacaatcgaaatcccctctcctactcgggatatgggggatggcaggggttggtaaatca 6748632  T
Q  192 accattgccaacgaaatttatactcagattgggaacttttttgaggacaaatgctacctagaatatgttaagggagcat----------ttcatactcta 281  Q
     | ||||| || |  ||||||  ||| |||||   || ||||||||| | |||||  |||||||||||  ||||| |||          ||| |||||||    
T  6748633 gctattgctaaagccatttatgatcaaattggtccctattttgaggatacatgctttctagaatatgtccagggaacatcagatgaaaattc-tactcta 6748731  T
Q  282 gtttctttacaagagaatattcttttagatatcgacaaagcaagtaaaatagatatatctgcagttgaatcaggaaaagtgattttaaaagaaagacttc 381  Q
    |||||||||||||||||  ||||||| ||  |||||| ||||| |||||||||| ||||| || |  |||| ||| ||| ||||||||||||||||||||    
T  6748732 gtttctttacaagagaaacttctttttgaactcgacacagcaactaaaatagatgtatctacaatgcaatctggagaagagattttaaaagaaagacttc 6748831  T
Q  382 agcataaaagggtacttcttatacttg 408  Q
    | ||||||| ||||||| |||||||||    
T  6748832 aacataaaaaggtactttttatacttg 6748858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 6503961 - 6503827
Alignment:
Q  89 agagagcatacactctcgtgcccaagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaa 188  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||||||||||||||||||    
T  6503961 agagagcatacattctcgtgcacaagatgtgattcaactattgaaacaatcaaaatctcctctcctgctggggatatgggggatgacagggattggtaaa 6503862  T
Q  189 tcaaccattgccaacgaaatttatactcagattgg 223  Q
    |||||||||||| | |  ||||||| |||||||||    
T  6503861 tcaaccattgccgaagccatttataatcagattgg 6503827  T

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Target: chr4; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 6792068 - 6792159
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 202  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6792068 caagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 6792159  T

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Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 6811523 - 6811612
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 200  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6811523 caagatgtgattcaacaattgaaacaatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcagccattgcc 6811612  T

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Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 6502710 - 6502599
Alignment:
Q  89 agagagcatacactctcgtgcccaagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaa 188  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| || ||||||||| |||||||| ||||||||| |||||||| |||||    
T  6502710 agagagcatacattctcatgcgcaagatgtgattcaactattgaaacaatcaagatctcctctcctgctagggatgtgggggatgtcagggattagtaaa 6502611  T
Q  189 tcaaccattgcc 200  Q
    ||||||||||||    
T  6502610 tcaaccattgcc 6502599  T

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Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 6593550 - 6593461
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 200  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  6593550 caagacgtgattcaactattgaaacaatcaaaaagtcctctcataatagggatatgggggatgacagggattggtaaatcaaccattgcc 6593461  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 6832044 - 6832131
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattg 198  Q
    |||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  6832044 caagatgtgattcaactattgaaacagtcaaaatctcctctcatactagggatatgggggatgccagggattggtaaatcaagcattg 6832131  T

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Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 6627199 - 6627110
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 200  Q
    ||||||||||||||||||||||||| |||||| | |||||| ||| |||||||||||||||||  |||||||||||||||||||||||||    
T  6627199 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcc 6627110  T

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Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 6522994 - 6522906
Alignment:
Q  114 gatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 202  Q
    |||||||||||||||||||||| |||||||| ||||||| || |||| ||||||||||||  |||||||||||||||||||||||||||    
T  6522994 gatgtgattcaactattgaaacaatcaaaatctcctctcgtaataggcatatgggggatggtagggattggtaaatcaaccattgccaa 6522906  T

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Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 6550831 - 6550723
Alignment:
Q  92 gagcatacactctcgtgcccaagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatca 191  Q
    ||||||| | |||||||  ||||||||||||||||||||||||| |||||||| |||||| ||  ||||||| ||||||||| |||||||||||||| ||    
T  6550831 gagcataaattctcgtgtgcaagatgtgattcaactattgaaacaatcaaaatctcctctacttatagggatttgggggatggcagggattggtaaaaca 6550732  T
Q  192 accattgcc 200  Q
    |||||||||    
T  6550731 accattgcc 6550723  T

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Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 6646747 - 6646859
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaacgaaattt 210  Q
    |||||||||||||| || ||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| | |  ||||    
T  6646747 caagatgtgattcacctgttgaaacaatcaagaagtcctctcctaatagggatatgggggatggcagggatcggtaaatcaaccattgccgaagccattt 6646846  T
Q  211 atactcagattgg 223  Q
    ||| |||||||||    
T  6646847 ataatcagattgg 6646859  T

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Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 415
Target Start/End: Original strand, 6811702 - 6811836
Alignment:
Q  281 agtttctttacaagagaatattcttttagatatcgacaaagcaagtaaaatagatatatctgcagttgaatcaggaaaagtgattttaaaagaaagactt 380  Q
    |||||||||||||| |||  ||||||||||| |||||||||||| ||||| | | ||  || || ||||||  ||||||| |||||||||||||||| ||    
T  6811702 agtttctttacaagcgaaacttcttttagatgtcgacaaagcaactaaaacaaagattcctacaattgaattgggaaaagagattttaaaagaaagattt 6811801  T
Q  381 cagcataaaagggtacttcttatacttgatgatgt 415  Q
    |  |||||||||||||||||| ||||||| |||||    
T  6811802 cgacataaaagggtacttcttgtacttgacgatgt 6811836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 6769229 - 6769318
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgcc 200  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||| | ||||| |||||||||||||||||||||||| | |||||||||    
T  6769229 caagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcc 6769318  T

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Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 6626955 - 6626886
Alignment:
Q  346 ttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgt 415  Q
    |||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||    
T  6626955 ttgaatcagggaaagtgattttaaaagaaagactccgtcataaaagtgtacttcttatacttgacgatgt 6626886  T

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Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 6502447 - 6502383
Alignment:
Q  343 cagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatactt 407  Q
    ||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||| |||||    
T  6502447 cagttgaatcaggaagaattattttaaaagaaagacttcaacataaaagggtacttcttctactt 6502383  T

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Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 6503696 - 6503632
Alignment:
Q  345 gttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 409  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  6503696 gttgaatcaggaagagttattttaaaagaaaggcttcaacataaaagggtacttcttctacttga 6503632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 6792312 - 6792384
Alignment:
Q  337 tatctgcagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 409  Q
    ||||| || |||||||||||| || ||| |||||| |||| ||||| |||||||||||||||||| |||||||    
T  6792312 tatctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttga 6792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 6647009 - 6647072
Alignment:
Q  346 ttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 409  Q
    ||||||||||||||   ||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  6647009 ttgaatcaggaaaaaatattttaaaagaaaaacttcataataaaagggtacttcttgtacttga 6647072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 6665419 - 6665485
Alignment:
Q  343 cagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 409  Q
    ||||| |||||||||  || ||||||||||| || ||||| |||||||||||||||||| |||||||    
T  6665419 cagttaaatcaggaagcgttattttaaaagacaggcttcaacataaaagggtacttcttctacttga 6665485  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 6832300 - 6832348
Alignment:
Q  361 tgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 409  Q
    |||||| |||||||| |||||  ||||||||||||||||||||||||||    
T  6832300 tgatttcaaaagaaaaacttcgacataaaagggtacttcttatacttga 6832348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 6561 - 6470
Alignment:
Q  111 caagatgtgattcaactattgaaacgatcaaaatgtcctctcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 202  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6561 caagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccattgccaa 6470  T

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Target: scaffold0729; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 6317 - 6245
Alignment:
Q  337 tatctgcagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 409  Q
    ||||| || |||||||||||| || ||| |||||| |||| ||||| |||||||||||||||||| |||||||    
T  6317 tatctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttga 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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