View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14277_high_4 (Length: 407)
Name: NF14277_high_4
Description: NF14277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14277_high_4 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 15387 - 15002
Alignment:
| Q |
12 |
aaacacagtattagctgcttgacacgatagtccaaatatatctcttcaatttctgcaccaactttgagccgctcatgattcccaaataacagcatgtctc |
111 |
Q |
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| T |
15387 |
aaacacagtaagagttgcttaacacgatagtccaaatatatctcttcaatttctgccccaactttcaactgctcatgatttccaaataacaacatatctc |
15288 |
T |
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| Q |
112 |
ccaaattacaaaacaaagcatcggaatttctatcaaacgattctctcaccatgctcaagacacgcgatgccacttccttaatggcaacatttgttggagc |
211 |
Q |
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| T |
15287 |
ctaaattacaaaataaagcatcagaatttctatcaaatgattctctcaccatgctcaagacacgtgatgccacttccttaatggcaatgtttgtaggagc |
15188 |
T |
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| Q |
212 |
acaaacaagagtcctacagttcattttgaatagagcaaaaagcagtgtgcctaatgtttttgtttttccagttcctggtggaccccaaataagatccact |
311 |
Q |
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| T |
15187 |
acaaacaagagtcctacagttcattttcaatagagcaaaaagcagtgtgcccaaagtttttgttttaccggttcctggtggaccccaaataagatccacg |
15088 |
T |
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| Q |
312 |
gtagacttgtgattgcaatggaaggaagaaaggcacgcacaaatagcctggttttgtgactcattcaattcagatgacagcctttg |
397 |
Q |
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| T |
15087 |
gtagacttatgattgcaatgaaaggaagaaaggcaagcacaaattgccttgttttgtgactcattcagctcagatgacagcctttg |
15002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 12233929 - 12234058
Alignment:
| Q |
171 |
acacgcgatgccacttccttaatggcaacatttgttggagcacaaacaagagtcctacagttcattttgaatagagcaaaaagcagtgtgcctaatgttt |
270 |
Q |
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| T |
12233929 |
acacgtgaagccacttccttaatagcaacatttgtcggggcacacacaaggattctatatttcattttcattaaaataaaaagcattgttcccaaagttt |
12234028 |
T |
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| Q |
271 |
ttgtttttccagttcctggtggaccccaaa |
300 |
Q |
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| T |
12234029 |
tagtctttccagtcccagggggaccccaaa |
12234058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 32543159 - 32543127
Alignment:
| Q |
266 |
tgtttttgtttttccagttcctggtggacccca |
298 |
Q |
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| T |
32543159 |
tgtttttgttttgccagttcctggtggacccca |
32543127 |
T |
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