View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14277_high_6 (Length: 339)
Name: NF14277_high_6
Description: NF14277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14277_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 53804683 - 53804985
Alignment:
| Q |
16 |
aatatctcttaaactaagttatttaactctgtatttagaaggaaacaagcaaaacaaaaaacaaagaatgagtacaatttataccttgacttcatgatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53804683 |
aatatctcttaaactaagttatttaactctgtatttagaaggaaacaagcaaaacaaaaaacaaagaa------caatttataccttgacttcatgatac |
53804776 |
T |
|
| Q |
116 |
agcttcttctcccacatgcatagtttactcaaagtagagcatagattttcatagctgattcccttgtctttgtaaactccttgacactctgcttggcgtc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53804777 |
agcttcttctcccacatgcatagtttactcaaagtagagcatagattttcatagctgatccccttgtctttgtaaactccttgacactccgcttggcgtc |
53804876 |
T |
|
| Q |
216 |
cacatggtgattccacgcatttaaccattagtggattcgatggagtaaacacatgcataatcttgcacgaaactaattaccaaaaatctcaatttagtta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53804877 |
cacatggtgattccacgcatttaaccattaggggattcgatggagtaaacacatgcataatcttgcacgaaactaattaccaaaaatctcaatttagtta |
53804976 |
T |
|
| Q |
316 |
attattttg |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
53804977 |
attattttg |
53804985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University