View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14277_low_8 (Length: 294)
Name: NF14277_low_8
Description: NF14277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14277_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 34136097 - 34135844
Alignment:
| Q |
26 |
tgatataggccttcaaatttcgtttttaacgtttctggttgctaatatattttggtttgttgagattcttgttgattataaagtatttcaacattttcaa |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136097 |
tgatataggccttcaaatttagtttttaacgtttctggttgctaatatattttggtttggtgagattcttgttgattataaagtatttcaacattttcaa |
34135998 |
T |
|
| Q |
126 |
cctgtcagcaaagctaaaccacggtcacatacttggtatctgg-tttagattcattgctccaaatcttattgttcctctacttccaaatgctccacattg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34135997 |
cctgtcagcaaagctaaaccacggtcacatacttggtatctggttttagattcattgctccaaatcttattgttcctctacttccaaatgctccacattg |
34135898 |
T |
|
| Q |
225 |
taacgatgaaagttgcgagctagttcggtatcaaattctgcataatgtagaaat |
278 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34135897 |
taacgatgaaatttgcgagctagttcggtatcaaattctgcataatgtagaaat |
34135844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 34139004 - 34138959
Alignment:
| Q |
81 |
tttgttgagattcttgttgattataaagtatttcaacattttcaac |
126 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
34139004 |
tttggtgagattcttgttgtttataaagtatttcaacatttacaac |
34138959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 13523672 - 13523708
Alignment:
| Q |
183 |
tccaaatcttattgttcctctacttccaaatgctcca |
219 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
13523672 |
tccaaatcttattgtttctctgcttccaaatgctcca |
13523708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 13613207 - 13613243
Alignment:
| Q |
183 |
tccaaatcttattgttcctctacttccaaatgctcca |
219 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
13613207 |
tccaaatcttattgtttctctgcttccaaatgctcca |
13613243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 21504550 - 21504514
Alignment:
| Q |
183 |
tccaaatcttattgttcctctacttccaaatgctcca |
219 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
21504550 |
tccaaatcttattgtttctctgcttccaaatgctcca |
21504514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University