View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_high_1 (Length: 722)
Name: NF14278_high_1
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 364 - 700
Target Start/End: Complemental strand, 4871592 - 4871258
Alignment:
| Q |
364 |
tttttgtaaaaaccgtttagatcaggctatgggtcacttttttataaccgttgtttgataataacattaatacattttgtaaaaatcaaatattatatga |
463 |
Q |
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| T |
4871592 |
tttttgtaaaaaccgtttggatcaggctatgggtcacttttttataaccgttgtttgataataacattaatacattttgtaaaaatcaaatattatatga |
4871493 |
T |
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| Q |
464 |
tcaaaaactttattaannnnnnnaatataatgtatttgagg-cccaatgtaatttgcgagaacctaaattggagtttcattctatttatttgatgcattt |
562 |
Q |
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| T |
4871492 |
tcaaaaaatttattaatttttttagtataatgtatttgagggcccaatgtaatttgcgggaacctaaattggagttttattctatttatttgatgcattt |
4871393 |
T |
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| Q |
563 |
ccactatgtggaagcatatcaaataagtgctcgtagaccatactaaattttcctctgaattgttgttgtagggaagtggaagataaggcctctaagtaat |
662 |
Q |
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| T |
4871392 |
ccactatgtggaagcatatcaaataagtgctcgtagaccatactaaactttcctctgaattgttgttgtagggaagtggaagataaggcctctaagta-- |
4871295 |
T |
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| Q |
663 |
tagatgaatgataagaggtttgccaattgagttttatc |
700 |
Q |
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| T |
4871294 |
-agatgaatgataagaggtttgccaattgagttttatc |
4871258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 4871953 - 4871721
Alignment:
| Q |
8 |
atggatcacaagtataagggtgacgaggaaacaacttcttgttgtttttggaaatagtaataatagaagaaacagcactaacaccaccaacacatcttct |
107 |
Q |
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| T |
4871953 |
atggatcacaagtataagggcgacgaggaaacaacttgttggtgtttttggaaatagtaataatagaagaaacagcactaacaccaccaacacatcttct |
4871854 |
T |
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| Q |
108 |
tcttaacattgagagcattgttgc---ttcgtgatagtgagaaagaagatgaaccctagttctgnnnnnnnnnnnnnnnntctgccctaacttgaaattc |
204 |
Q |
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| T |
4871853 |
tcttaacattgagagcattgttgctaattcgtgatagtgagaaagaagatgaaccctagttctgaaaaacaaaaataaaatctgccctaacttgaaattc |
4871754 |
T |
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| Q |
205 |
aacacaaagatgaacccttgttgcggtctttac |
237 |
Q |
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| T |
4871753 |
aacacaaagaggaacccttgttgcggtctttac |
4871721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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