View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_high_12 (Length: 262)
Name: NF14278_high_12
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 31760141 - 31759886
Alignment:
| Q |
11 |
gtgagtgtaaattcctataaagaaaagagatgtgaaaactaccctcagtatacggataattgcactcacaatattctctcggttttatttaaacaacact |
110 |
Q |
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| T |
31760141 |
gtgagtgtaaattcctataaagaaaagagatgtgaaaactaccctcagtatacggataattgcactcacaatattctctcggttttatttaaacaacact |
31760042 |
T |
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| Q |
111 |
aacaa---------gt-----------aacaacctcccttacattttcacttttaatttagatgattaatccataatcattagtgaagttagttttaata |
190 |
Q |
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| T |
31760041 |
aacaacctcctctagttttaaaaaaacaacaacctcccttacattttcacttttaatttagatgattaatccataatcattagtgaagttagtttaaata |
31759942 |
T |
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| Q |
191 |
attagctttcctttaaaagtttg-tagttatttactaaatgacttgcactacaagt |
245 |
Q |
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| T |
31759941 |
attagctttactttaaaagtttgttagttatttactaaatgacttgcactacaagt |
31759886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 32635838 - 32635798
Alignment:
| Q |
148 |
ttagatgattaatccataatcattagtgaagttagttttaa |
188 |
Q |
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| T |
32635838 |
ttagatgattaatccacaatcattagtaaagttagttttaa |
32635798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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