View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14278_high_5 (Length: 518)
Name: NF14278_high_5
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 58 - 507
Target Start/End: Original strand, 30474457 - 30474906
Alignment:
| Q |
58 |
caaggaaacatgttagtttgaagttgccttcgaacatttaaatatgtctccannnnnnnaccatcgtaatttatagtcataatagacatgcaatcaagaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30474457 |
caaggaaacatgttagtttgaagttgccttcgaacatttaaatatgtctccatatttttaccatcgtaatttatagttataatagacatgcaatcaagaa |
30474556 |
T |
|
| Q |
158 |
agagccagctgggaataaattattggccctaaagctatgggagaggagtaacaagccgtcactcaacattctcctcgagccttcgcctaatatatagttc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474557 |
agagccagctgggaataaattattggccctaaagctataggagaggagtaacaagccgtcactcaacattctcctcgagccttcgcctaatatatagttc |
30474656 |
T |
|
| Q |
258 |
atccaa-catctttgcaatcattaatttatttttatattattttctcatttggtagggatagtcattatgttattttagaataatcttctacgtcatctc |
356 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474657 |
atccaaacatctttgcaatcattaatttatttttatattattttctcatttggtagggattgtcattatgttattttagaataatcttctacgtcatctc |
30474756 |
T |
|
| Q |
357 |
cttccaatgacgtgtaatgtgtcctaaatatgtggtgcctggtttcacgtgtcctccagcgcatgctcatcgtcccgttgatttaggatttttgacaaaa |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474757 |
cttccaatgacgtgtaatgtgtcctaaatatgtggtgcctggtttcacgtgtcctccagcgcatgctcatcgtcccgttgatttaggatttttgacaaaa |
30474856 |
T |
|
| Q |
457 |
agagttaaattcactctacaagttatcctaaatcatccatgcatgcttctt |
507 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474857 |
a-agttaaattcactctacaagttatcctaaatcatccatgcatgcttctt |
30474906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 39025276 - 39025209
Alignment:
| Q |
305 |
tttggtagggatagtcattatgttattttagaataatcttctacgtcatctccttccaatgacgtgta |
372 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||| | ||||| |||||| |||||||||| |
|
|
| T |
39025276 |
tttggtagggatagtaattatttttttttagaataatcttgtgcgtcacacccttcctatgacgtgta |
39025209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University