View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14278_high_6 (Length: 510)
Name: NF14278_high_6
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 3207881 - 3208379
Alignment:
| Q |
1 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgttaaacgatgatgtactatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207881 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgttaaacgatgatgtactatt |
3207980 |
T |
|
| Q |
101 |
gtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207981 |
gtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaa |
3208080 |
T |
|
| Q |
201 |
aatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3208081 |
aatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgt |
3208180 |
T |
|
| Q |
301 |
ttaaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3208181 |
ttaaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagc |
3208280 |
T |
|
| Q |
401 |
accaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3208281 |
accaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcat |
3208379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 3201907 - 3202401
Alignment:
| Q |
1 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgttaaacgatgatgtactatt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3201907 |
accaatctggatgcgagtttttcaacaaagcagcaatgccactaagatgaggacaagacatcgaggtacctgcaattatgttaaacgatgatgtactatt |
3202006 |
T |
|
| Q |
101 |
gtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaa |
200 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3202007 |
gtctaatgatataggccatcctgctagaatgttcaatccaggtccaattatgtctggtttcagaattccagggcttgttttgcttggacctcttgatgaa |
3202106 |
T |
|
| Q |
201 |
aatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgt |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
3202107 |
aatgaagcaacttgaggggaaagtggatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatgg |
3202206 |
T |
|
| Q |
301 |
ttaaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
3202207 |
ataaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagc |
3202306 |
T |
|
| Q |
401 |
accaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttct |
495 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
3202307 |
accaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattct |
3202401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 3215817 - 3216318
Alignment:
| Q |
1 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgttaaacgatgatgtactatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| | | || | || | || |
|
|
| T |
3215817 |
accaatctggatgagagtttttcaacagagcagcaattccactgagatgtggacaagacattgaggtacctgaaatgatgttgtatggtggtatattgtt |
3215916 |
T |
|
| Q |
101 |
gtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaa |
200 |
Q |
| |
|
||| ||||||| | ||||| | || |||||||||| |||||| |||| ||||||||||||||||||||| |||||| ||| | |||| |||||||||||| |
|
|
| T |
3215917 |
gtccaatgatacatgccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaa |
3216016 |
T |
|
| Q |
201 |
aatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgt |
300 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
3216017 |
aagtaagctacttgaggggcattgggatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatgg |
3216116 |
T |
|
| Q |
301 |
ttaaaccagcagagtaacttacatgcacagcaggtaga---acatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagc |
397 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| | |||||||| | |||||| ||| ||| | || ||| |||| || ||||| || |
|
|
| T |
3216117 |
ataaaccagcagagtaacttacaagtgcagcaggtagattgtcttgaacatcggattttggatcaaaaccttgaagtttactattcatgaggatcatggc |
3216216 |
T |
|
| Q |
398 |
agcaccaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttc |
497 |
Q |
| |
|
|| ||||| || ||||||||||||||| |||| ||| || | ||||| ||||||| |||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
3216217 |
agatccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttcttc |
3216316 |
T |
|
| Q |
498 |
at |
499 |
Q |
| |
|
|| |
|
|
| T |
3216317 |
at |
3216318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 3179071 - 3178861
Alignment:
| Q |
1 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgttaaacgatgatgtactatt |
100 |
Q |
| |
|
||||||| |||||||| |||| | ||| |||||||||||||| ||||||||||| |||||||| || || ||| | ||| ||| | || || | || |
|
|
| T |
3179071 |
accaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacattgaagtgccagaagtaatggcaaaaggtggagtcttgtt |
3178972 |
T |
|
| Q |
101 |
gtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaa |
200 |
Q |
| |
|
||| | ||| | ||||||| | || |||||||| | || || |||| ||||||||||| ||||||||||| ||| || |||||| |||||||| ||| |
|
|
| T |
3178971 |
gtcaattgaaacaggccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaa |
3178872 |
T |
|
| Q |
201 |
aatgaagcaac |
211 |
Q |
| |
|
|||||| |||| |
|
|
| T |
3178871 |
aatgaaacaac |
3178861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 3239769 - 3239979
Alignment:
| Q |
1 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgttaaacgatgatgtactatt |
100 |
Q |
| |
|
||||||| |||||||| |||| | ||| |||||||||||||| ||||||||||| |||||||| || || ||| | ||| ||| | || || | || |
|
|
| T |
3239769 |
accaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacattgaagtgccagaagtaatggcaaaaggtggagtcttgtt |
3239868 |
T |
|
| Q |
101 |
gtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaa |
200 |
Q |
| |
|
||| | ||| | ||||||| | || |||||||| | || || |||| ||||||||||| ||||||||||| ||| || |||||| |||||||| ||| |
|
|
| T |
3239869 |
gtcaattgaaacaggccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaa |
3239968 |
T |
|
| Q |
201 |
aatgaagcaac |
211 |
Q |
| |
|
|||||| |||| |
|
|
| T |
3239969 |
aatgaaacaac |
3239979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 3220886 - 3220947
Alignment:
| Q |
150 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
211 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| |||||| |||||||| ||||||||| |||| |
|
|
| T |
3220886 |
atgtctggtttaagaattccaggactttcttggcttggtcctcttgaagaaaatgaaacaac |
3220947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 3231119 - 3231180
Alignment:
| Q |
150 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
211 |
Q |
| |
|
||||||||||| |||||||| || ||| ||| |||||| |||||||| ||||||||| |||| |
|
|
| T |
3231119 |
atgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaatgaaacaac |
3231180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42446048 - 42445967
Alignment:
| Q |
1 |
accaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgtt |
82 |
Q |
| |
|
||||||| ||||||||| |||| | |||||| ||||||||||||||||| || ||||||||||| || ||||| || ||||| |
|
|
| T |
42446048 |
accaatcaggatgagagcttttgagcaaagccgcaatgccactaagatgtgggcatgacattgatgtgcctgacataatgtt |
42445967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 7523872 - 7523919
Alignment:
| Q |
39 |
ccactaagatgaggacatgacattgaggtacctgaaattatgttaaac |
86 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7523872 |
ccactaacatgaggacatgacatagaagtacctgaaattatgttaaac |
7523919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University