View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_low_11 (Length: 262)
Name: NF14278_low_11
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31760561 - 31760321
Alignment:
| Q |
1 |
ggataatgattgattaattgtttaatatgaagttgagggaannnnnnnatattttctataaattatcaaaatatgttgattgttgagaataagaattcta |
100 |
Q |
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| T |
31760561 |
ggataatgattgattaattgtttaatataaagttgagggaatttttttatattttctataaattatcaaaatatgttgattgttgagaataagaattcta |
31760462 |
T |
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| Q |
101 |
ggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtgagatttattattatgtttcatttcaaaagtattaagttttatttgtgtgactatt |
200 |
Q |
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| T |
31760461 |
ggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtgagatttattattatgtttcatttcaaaagtattaagttttatttgtgtgactatt |
31760362 |
T |
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| Q |
201 |
tggattgtgattattgctaaatgtttatacgtattaaaatt |
241 |
Q |
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| T |
31760361 |
tggattgtgattattgctaaatgtttatacgtattaaaatt |
31760321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 198
Target Start/End: Original strand, 31750208 - 31750352
Alignment:
| Q |
55 |
tctataaattatcaaaatatgttgattgttgagaataagaattctaggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtgagattta-- |
152 |
Q |
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| T |
31750208 |
tctataaattattcaattattttgattgttgagaataagaattctaggttcaaaacagaaccatgaattgttaaggagtctgttaaacgtgatatttaat |
31750307 |
T |
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| Q |
153 |
ttattatgtttcatttcaaaagtattaagttttatttgtgtgacta |
198 |
Q |
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| T |
31750308 |
ttattgt-tttcatttcaagagtcttaaattttatctgtgtgacta |
31750352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 31767232 - 31767141
Alignment:
| Q |
55 |
tctataaattatcaaaatatgttgattgttgagaataagaattctaggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtga |
146 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| |||| |
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| T |
31767232 |
tctataaattattcaaatattttgattgttgagaataataattctaggttcaaaacagaaccatgaattgttaaggagtctgttaaacgtga |
31767141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 31752949 - 31752818
Alignment:
| Q |
1 |
ggataatgattgattaattgtttaatatgaagttgagggaannnnnnnatattttctataaattatcaaaatatgttgattgttgagaataagaattcta |
100 |
Q |
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|||||| |||||||| |||||||||||| |||||| || || |||||||| |||| ||||||||||||||||| |||||||||||||||| ||| |
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| T |
31752949 |
ggataaagattgatttattgtttaatataaagttgtggtaatgtttt-atattttcgataacttatcaaaatatgttgaatgttgagaataagaatacta |
31752851 |
T |
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| Q |
101 |
ggttcaaaacagaatcttgaattgtcaaggagt |
133 |
Q |
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| T |
31752850 |
gattcaaaacaggaccttgaatagtcaaggagt |
31752818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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