View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_low_2 (Length: 613)
Name: NF14278_low_2
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 11 - 597
Target Start/End: Complemental strand, 3381747 - 3381161
Alignment:
| Q |
11 |
gaagaatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattgact |
110 |
Q |
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| T |
3381747 |
gaagaatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattgact |
3381648 |
T |
|
| Q |
111 |
tgtgttggtttattcaagtaccgctctattgctttcccgattaatgaatgagggaacaatatcgtaaacacaatctcctcttcttcttcttatttggtgt |
210 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3381647 |
tgagttggtttattcaagtaccgctctattgctttcccgattaatgaatgagggaacaatatcgtaaacacaatctcctcttcttcttcttatttggtgt |
3381548 |
T |
|
| Q |
211 |
tgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaatttgtagaact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3381547 |
tgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaatttgtagaact |
3381448 |
T |
|
| Q |
311 |
cccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatgatctttca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3381447 |
cccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatgatctttca |
3381348 |
T |
|
| Q |
411 |
tggttctagtctatacaatagaaactcaacactctcttcgaaggtgcaattctagcacgttagttttaagatgttctatgttacagcatgcagtgttatg |
510 |
Q |
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| T |
3381347 |
tggttctagtctatacaatagaaactcaacactctcttcgaaggtgcaattctagcacgttagttttaagatgttctatgttacagcatgcagtgttatg |
3381248 |
T |
|
| Q |
511 |
ctatatcacaattgataaaagctttttgtgcttgttatccgataaagattgttatcagataaagtttgtatcaatcaatcttgttgg |
597 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3381247 |
ctatatcacaattgataaaagcttattgtgcttgttatccgataaagattgttatcagataaagtttgtatcaatcaatcttgttgg |
3381161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 1489079 - 1488840
Alignment:
| Q |
15 |
aatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattga-cttgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||| | ||| |
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| T |
1489079 |
aatatggcaatagttgtcttggcctccatgaatctgttgtgcgggaaaaatttcttaagaaatctctcttaaaattcataccaatttgaattgaccatgt |
1488980 |
T |
|
| Q |
114 |
gttggtttattcaagtaccgctctattgctttcccgattaatgaatg-agggaacaatatcgtaaacacaatctcc---------tcttcttcttcttat |
203 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||| | |
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| T |
1488979 |
gttggtttatctaagtaccgctttgttgctttcccgattaatgaatgaaggcaacaatatcgtaaacacaatctcctcctcctcttcttcttctccttct |
1488880 |
T |
|
| Q |
204 |
ttggtgttgcaagtgtatcaacaagttcatatattcttgt |
243 |
Q |
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|||||||||||| |||| |||||||||||||||||||||| |
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| T |
1488879 |
ttggtgttgcaattgtaccaacaagttcatatattcttgt |
1488840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 1488847 - 1488769
Alignment:
| Q |
374 |
attcctgtatcatggtaatatgctttatgatctttcatggttctagtctatacaatagaaactcaacactctcttcgaagg |
454 |
Q |
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|||| ||||| ||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
1488847 |
attcttgtataatggtaatatgcttt--gatctgtcatggttctactctatacaacagaaactcaacactctcttccaagg |
1488769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 17379939 - 17379907
Alignment:
| Q |
458 |
aattctagcacgttagttttaagatgttctatg |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
17379939 |
aattctagcacgttagttttaagatgttctatg |
17379907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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