View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_low_20 (Length: 216)
Name: NF14278_low_20
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 27977620 - 27977763
Alignment:
| Q |
18 |
gtagtgtgattgtgtgacaatatatagaacatgaatgttattatggtatttctaatttcaaggttggattttcttctataattcttgaatctttaaaatc |
117 |
Q |
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| T |
27977620 |
gtagtgtgattgtgtgacaatatatagaacatgaatgttattatggtatttctaatttcaaggttggattttcttctataattcttgcatctttaaaatc |
27977719 |
T |
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| Q |
118 |
catgtatttgtgtttaatgtgttcatatattcagaaagcaaatg |
161 |
Q |
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| T |
27977720 |
catgtatttgtgtttaatgtgttcatatattcagaaagcaaatg |
27977763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 27977807 - 27977840
Alignment:
| Q |
169 |
ctcatgaatataataaccagcttacttttgtgat |
202 |
Q |
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| T |
27977807 |
ctcatgaatataataaccagcttacttttatgat |
27977840 |
T |
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