View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_low_3 (Length: 545)
Name: NF14278_low_3
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 105 - 529
Target Start/End: Original strand, 2813623 - 2814047
Alignment:
| Q |
105 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatataccaatgattattttaaatttcaaatcatatatt |
204 |
Q |
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| T |
2813623 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatatatccatgattattttaaatttcaaatcatatatt |
2813722 |
T |
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| Q |
205 |
atagtggtcatttgtgctatgtatataatttatttacagtagtgatataattaataaaccatatatacgcaagcaatataaagtttaagcataattatta |
304 |
Q |
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| T |
2813723 |
atagtggtcatttgtgctatgtatataatttatttacagtagtgatataattaataaaccatatatacgcaagcaatataaagtttaagtataattatta |
2813822 |
T |
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| Q |
305 |
ctgttgtatatttatgtatcatattaatcaataacatcaaaatatgaacaccagaaagatatgggaaacaaaggttgcatgataacgaaaaaagtattaa |
404 |
Q |
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| T |
2813823 |
ctgttgtatatttatgtatcatattaatcaataacatcaaaatatgaaaaccagaaagatatgggaaacaaaggttgcatgataacgaaaaaagtattaa |
2813922 |
T |
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| Q |
405 |
ccatgtgatgtcttctttgtttcttgttcaacttgacctctaattaggcactattcttttagtgaccgatttagaaaccgaaaaatttcagttacccaag |
504 |
Q |
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| T |
2813923 |
ccatgcgatgtcttctttgtttcttgttcaacttgacctataattaggcactgttcttttagtgaccgatttagaaaacgaaaaatttcagttacccaag |
2814022 |
T |
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| Q |
505 |
taagcaggagggctctgcagttact |
529 |
Q |
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| T |
2814023 |
taagcaggagggctctgcagttact |
2814047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 2813497 - 2813549
Alignment:
| Q |
14 |
cataggggaagatatgcagcaatgccaatggagacagatacttattcatccga |
66 |
Q |
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| T |
2813497 |
cataggggaagatatgcagcaatgccaatggagacagatacttattcatccga |
2813549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 2825251 - 2825301
Alignment:
| Q |
415 |
tcttctttgtttcttgttcaacttgacctctaattaggcactattctttta |
465 |
Q |
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| T |
2825251 |
tcttctttgtttcttattcaacttgacctctaaataggaactgttctttta |
2825301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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