View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_low_4 (Length: 518)
Name: NF14278_low_4
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 500
Target Start/End: Original strand, 52630608 - 52631096
Alignment:
| Q |
15 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgacttcagaacatgtatccataattcaccaccccaaacatcc |
114 |
Q |
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| T |
52630608 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgccttcagaacatgtatccataattcaccaccccaaacatcc |
52630707 |
T |
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| Q |
115 |
acatacatttctttctcccaaattagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccctgtatctgcttgtccgt |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
52630708 |
acatacatttctttctcccaaactagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccttgtatccgcttgtccgt |
52630807 |
T |
|
| Q |
215 |
ttattgagtgtccgtgtcctctcgctgacaccgcaaa---cttctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630808 |
ttattgagtgtccgtgtcctctcgctgacaccgcaaagtactgctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcg |
52630907 |
T |
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| Q |
312 |
aaccaccgcaatcgtctctcctttgctgcttaacctcccaaaatccaatgaagctgcttctaattcagcggcctccgtgcttacttcaccttcaagtcct |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52630908 |
aaccaccgcaatcgtctctcctttgctgcttaacctcccaaaatccaatgaagctgcttctaatttagcggcctccgtgcttacttcaccttcaagtcct |
52631007 |
T |
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| Q |
412 |
atgtggaggatctccgttaatgtttgatccactgttaatccttcagatacaattatacggcatatggtgaatgtcaacagaatagtaac |
500 |
Q |
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| T |
52631008 |
atgtggaggatctccgttaatgtttgatccactgttaatccttcagatacaattatacggcatatggtgaatgtcaacagaatagtaac |
52631096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 17243465 - 17243437
Alignment:
| Q |
16 |
acagacaaatacaagtaatcagtccaaga |
44 |
Q |
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| T |
17243465 |
acagacaaatacaagtaatcagtccaaga |
17243437 |
T |
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