View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14278_low_7 (Length: 428)

Name: NF14278_low_7
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14278_low_7
NF14278_low_7
[»] chr7 (4 HSPs)
chr7 (23-345)||(2469980-2470305)
chr7 (350-418)||(2469884-2469952)
chr7 (59-207)||(15178905-15179053)
chr7 (65-124)||(610186-610245)
[»] chr4 (3 HSPs)
chr4 (59-207)||(26815660-26815808)
chr4 (65-124)||(115602-115661)
chr4 (59-124)||(54696245-54696310)
[»] scaffold0096 (1 HSPs)
scaffold0096 (65-124)||(52469-52528)
[»] chr6 (2 HSPs)
chr6 (65-124)||(8998300-8998359)
chr6 (33-124)||(9007469-9007560)
[»] chr5 (5 HSPs)
chr5 (65-124)||(724971-725030)
chr5 (59-207)||(24415998-24416146)
chr5 (59-207)||(30451061-30451209)
chr5 (60-101)||(22454301-22454342)
chr5 (297-401)||(23920331-23920434)
[»] chr3 (2 HSPs)
chr3 (59-202)||(28361150-28361293)
chr3 (33-124)||(19688251-19688342)
[»] scaffold0028 (1 HSPs)
scaffold0028 (59-207)||(100759-100907)
[»] chr2 (2 HSPs)
chr2 (33-124)||(24992507-24992598)
chr2 (23-204)||(29863430-29863612)
[»] chr8 (2 HSPs)
chr8 (355-405)||(19753877-19753927)
chr8 (59-124)||(20747873-20747938)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 23 - 345
Target Start/End: Complemental strand, 2470305 - 2469980
Alignment:
Q  23 ggccttattcaaaagagttctagtcatttatcgcaatgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatga 122  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2470305 ggccttattcaaaagagttccagtcattcatcgcaatgttctattttttctttaaacaactcaattttattgaggagtttttggatagggaaaattatga 2470206  T
Q  123 gagacgccattctaatcaaaaaatgtcttgaatgaatcattttttaattctcttccatgatcacttcttaatgagatgatctttgcatctttattatctt 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   |||||||    
T  2470205 gagatgccattctaatcaaaaaatgtcttgaatgaatcattttttaattctcctctatgatcacttcttaatgagatgatctttgcatct---ttatctt 2470109  T
Q  223 tctcattctgaac-nnnnnnnnnnnnnnnnnaaaagcttcaaaagattcatc----nnnnnnnnaagaaa-gaacccatctgaaaaagttatctacaatg 316  Q
    |||||||||||||                  |||||||||||||||||||||            |||||| |||||||||||||||||||||||||||||    
T  2470108 tctcattctgaacttttttacaatttttttgaaaagcttcaaaagattcatcctttttttttttaagaaaagaacccatctgaaaaagttatctacaatg 2470009  T
Q  317 acaaaaccatatttctttccttctagact 345  Q
    |||||||||||||||||||||||||||||    
T  2470008 acaaaaccatatttctttccttctagact 2469980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 350 - 418
Target Start/End: Complemental strand, 2469952 - 2469884
Alignment:
Q  350 attttgataggtctaaagagatcaatgtgaaatagttctaaaggtctttttgttgacacataacctttg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469952 attttgataggtctaaagagatcaatgtgaaatagttctaaaggtctttttgttgacacataacctttg 2469884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 15179053 - 15178905
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgagagacgccattctaatcaaaaaatgtcttgaatgaa 158  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | ||||||||||||||||  || || | |||||| ||  | || ||  ||    
T  15179053 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgagagattcctttttcatcaaagaaatttttaaagaaa 15178954  T
Q  159 tcattttttaattctcttccatgatcacttcttaatgagatgatctttg 207  Q
     ||||||  ||||||| ||||||||||||||||| ||| ||||| ||||    
T  15178953 gcattttcaaattctcctccatgatcacttcttactgaaatgatttttg 15178905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 610245 - 610186
Alignment:
Q  65 attttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||||    
T  610245 attttttctttcaacaactccattttgttgaggagttctaggacaggaaaaattatgaga 610186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 26815808 - 26815660
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgagagacgccattctaatcaaaaaatgtcttgaatgaa 158  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| ||| ||||||||||||||||  || || | |||||| ||  | || ||  ||    
T  26815808 tgttctattttttctttcaacaactccattttgttgtggagttcttgcatatgaaaaattatgagagattcctttttcatcaaagaaatttttaaagaaa 26815709  T
Q  159 tcattttttaattctcttccatgatcacttcttaatgagatgatctttg 207  Q
     ||||||  ||||||| ||||||||||||||||| ||| ||||| ||||    
T  26815708 gcattttcaaattctcctccatgatcacttcttactgaaatgatttttg 26815660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 115661 - 115602
Alignment:
Q  65 attttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||||    
T  115661 attttttctttcaacaactccattttgttgaggagttctaggacaggaaaaattatgaga 115602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 54696245 - 54696310
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | ||||||||||||||    
T  54696245 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgaga 54696310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 52528 - 52469
Alignment:
Q  65 attttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||||    
T  52528 attttttctttcaacaactccattttgttgaggagttctaggacaggaaaaattatgaga 52469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 8998359 - 8998300
Alignment:
Q  65 attttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||||    
T  8998359 attttttctttcaacaactccattttgttgaggagttctaggacaggaaaaattatgaga 8998300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 9007560 - 9007469
Alignment:
Q  33 aaaagagttctagtcatttatcgcaatgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    |||| |||||| | ||||| | |||| |||| ||||||||||| |||||||| ||||| |||||||||| | ||| | || |||||||||||    
T  9007560 aaaatagttcttgccatttcttgcaaagttctattttttctttcaacaactccattttgttgaggagttctaggacaagagaaattatgaga 9007469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 724971 - 725030
Alignment:
Q  65 attttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||||    
T  724971 attttttctttcaacaactccattttgttgaggagttctaggacaggaaaaattatgaga 725030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 24416146 - 24415998
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgagagacgccattctaatcaaaaaatgtcttgaatgaa 158  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | |||||||||||||| |  || || | |||||| ||  | || ||  ||    
T  24416146 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgagaaattcctttttcatcaaagaagtttttaaagaaa 24416047  T
Q  159 tcattttttaattctcttccatgatcacttcttaatgagatgatctttg 207  Q
     ||||||  ||||||| ||||||||||||||||| ||| ||||| ||||    
T  24416046 gcattttcaaattctcctccatgatcacttcttactgaaatgatttttg 24415998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 30451061 - 30451209
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgagagacgccattctaatcaaaaaatgtcttgaatgaa 158  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | |||||||||||||| |  || || | |||||| ||  | || ||  ||    
T  30451061 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgagaaattcctttttcatcaaagaagtttttaaagaaa 30451160  T
Q  159 tcattttttaattctcttccatgatcacttcttaatgagatgatctttg 207  Q
     ||||||  ||||||| ||||||||||||||||| ||| ||||| ||||    
T  30451161 gcattttcaaattctcctccatgatcacttcttactgaaatgatttttg 30451209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 22454301 - 22454342
Alignment:
Q  60 gttcaattttttctttaaacaactcaattttattgaggagtt 101  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  22454301 gttcaattttttctttcaacaactccattttgttgaggagtt 22454342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 23920331 - 23920434
Alignment:
Q  297 tgaaaaagttatctacaatgacaaaaccatatttctttccttctagactagctattttgataggtctaaagagatcaatgtgaaatagttctaaaggtct 396  Q
    ||||| ||| ||||| ||||| || ||| |||||||||||| | |||||||  ||||||||||||  ||||| ||||||| |||  |||||||| |||||    
T  23920331 tgaaatagtcatctaaaatgagaagaccgtatttctttcctcc-agactagaaattttgataggttgaaagaaatcaatgggaagcagttctaagggtct 23920429  T
Q  397 ttttg 401  Q
     ||||    
T  23920430 gtttg 23920434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 28361150 - 28361293
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgagagacgccattctaatcaaaaaatgtcttgaatgaa 158  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | ||||||||||||||||  || || | |||||| ||  | || ||  ||    
T  28361150 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgagagattcctttttcatcaaagaaatttttaaagaaa 28361249  T
Q  159 tcattttttaattctcttccatgatcacttcttaatgagatgat 202  Q
     ||||||  ||||||| ||||||||||||||||| ||| |||||    
T  28361250 gcattttcaaattctcctccatgatcacttcttactgaaatgat 28361293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 19688342 - 19688251
Alignment:
Q  33 aaaagagttctagtcatttatcgcaatgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    |||| |||||| | ||||| | |||| |||| ||||||||| | |||||||| ||||| |||||||||| | ||| | ||||||||||||||    
T  19688342 aaaatagttcttgccatttcttgcaaagttctattttttctatcaacaactccattttgttgaggagttctaggacaagaaaaattatgaga 19688251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 100759 - 100907
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgagagacgccattctaatcaaaaaatgtcttgaatgaa 158  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | |||||||||||||| |  || || | |||||| ||  | || ||  ||    
T  100759 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgagaaattcctttttcatcaaagaagtttttaaagaaa 100858  T
Q  159 tcattttttaattctcttccatgatcacttcttaatgagatgatctttg 207  Q
     ||||||  ||||||| ||||||||||||||||| ||| ||||| ||||    
T  100859 gcattttcaaattctcctccatgatcacttcttactgaaatgatttttg 100907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 24992598 - 24992507
Alignment:
Q  33 aaaagagttctagtcatttatcgcaatgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    |||| |||||| | ||||| | |||| |||| ||||||||||| ||||| || ||||| |||||||||| | ||| | ||||||||||||||    
T  24992598 aaaatagttcttgccatttcttgcaaagttctattttttctttcaacaaatccattttgttgaggagttctaggacaagaaaaattatgaga 24992507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 29863430 - 29863612
Alignment:
Q  23 ggccttattcaaaagagttctagtcatttatcgcaatgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatga 122  Q
    ||||| ||| ||||||||||||| ||||| | ||||||||  ||||||  ||| |||||||  ||||| |||||| ||| |||||  |||||| |||| |    
T  29863430 ggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacgggaaaa-ttataa 29863528  T
Q  123 gagacgccattctaatcaaaaaatgt--cttgaatgaatcattttttaattctcttccatgatcacttcttaatgagatgatct 204  Q
    |||||  |||||| || ||||||| |  ||||||  | |||||||  |||||   |||||||||| |||| | |||||||||||    
T  29863529 gagacatcattctcataaaaaaatatatcttgaaccattcattttaaaattcctctccatgatcatttctcactgagatgatct 29863612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 19753927 - 19753877
Alignment:
Q  355 gataggtctaaagagatcaatgtgaaatagttctaaaggtctttttgttga 405  Q
    |||||||| ||| | ||||||||||| |||||| |||||||||||||||||    
T  19753927 gataggtccaaataaatcaatgtgaagtagttcaaaaggtctttttgttga 19753877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 20747938 - 20747873
Alignment:
Q  59 tgttcaattttttctttaaacaactcaattttattgaggagtttttggataggaaaaattatgaga 124  Q
    ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | ||||||||||||||    
T  20747938 tgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaaattatgaga 20747873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University