View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14278_low_9 (Length: 352)
Name: NF14278_low_9
Description: NF14278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14278_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12746647 - 12746992
Alignment:
| Q |
1 |
acccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgac |
100 |
Q |
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| T |
12746647 |
acccgacctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccgggaataactggcccaaccgattcattgttgac |
12746746 |
T |
|
| Q |
101 |
caacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatcattcaaaaaatctcagtcgat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
12746747 |
caacgtagaatagtcaattggcaccacgcacatattcatccaatgtatccatttatcattaaagctcattttcatcatcattcaaaaaatttcagtcgat |
12746846 |
T |
|
| Q |
201 |
acgatcatacgctttac-------------tagtgtcgcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctattgcagccttg |
287 |
Q |
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||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12746847 |
acgatcatacgttttactaatgtccagttttagcgtcgcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctattgcagccttg |
12746946 |
T |
|
| Q |
288 |
gtgttatcaagaattgacctcctaggtacaaaggttgattgattat |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12746947 |
gtgttatcaagaattgacctcctaggtacaaaggttgattgattat |
12746992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12809731 - 12810076
Alignment:
| Q |
1 |
acccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgac |
100 |
Q |
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| T |
12809731 |
acccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgac |
12809830 |
T |
|
| Q |
101 |
caacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatcattcaaaaaatctcagtcgat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
12809831 |
caacgtagaatagtcaattggcaccacgcacatattcatccaatgtatccatttatcattaaagctcattttcatcatcattcaaaaaatttcagtcgat |
12809930 |
T |
|
| Q |
201 |
acgatcatacgcttta-------------ctagtgtcgcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctattgcagccttg |
287 |
Q |
| |
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| T |
12809931 |
acaatcatacgctttattaatgtccagttttagcgtcgtacatccctcattaccacgagtctttgttttcatgtgatggatgacttctattgcagccttg |
12810030 |
T |
|
| Q |
288 |
gtgttatcaagaattgacctcctaggtacaaaggttgattgattat |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12810031 |
gtgttatcaagaattgacctcctaggtacaaaggttgattgattat |
12810076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 17660525 - 17660631
Alignment:
| Q |
72 |
ataactggcccaaccgattcattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattt |
171 |
Q |
| |
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|||||||||||||| ||||||||| |||||| | ||||||| | ||| ||| ||||| |||||||||| |||||||| |||| ||||||||||| |
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| T |
17660525 |
ataactggcccaacaacttcattgttaaccaacacataatagtctacagactccagacacatgctcatccaatgaatccatttgtcatcaaagcccattt |
17660624 |
T |
|
| Q |
172 |
tcatcat |
178 |
Q |
| |
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| ||||| |
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| T |
17660625 |
taatcat |
17660631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 21976939 - 21977283
Alignment:
| Q |
7 |
cctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgaccaacgt |
106 |
Q |
| |
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|||| |||||||||||||| ||||||| ||| ||||||||| ||||| |||||||| | ||||||||||||||||| || |||||| ||||||||||| |
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| T |
21976939 |
cctccgcacaaataatgaaaaaatacggggataaagggtctacttgacgcaaacctcttccaggaataactggccccactaattcatagttgaccaacgc |
21977038 |
T |
|
| Q |
107 |
agaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatca-----ttcaaaaaatctcagtcgata |
201 |
Q |
| |
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||| || |||| ||| || |||||| |||| |||||||||||| |||||||| | ||| |||||| ||||| |||||||| || ||||||||| |
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| T |
21977039 |
agagtaatcaaccgacttaacacacatactcattcaatgtatccatctatcattataaccccttttcagcatcacctgcttcaaaaattcccagtcgata |
21977138 |
T |
|
| Q |
202 |
cgatcatacgcttta-------ctag------tgtcgcacatccctcattaccacgagtctttgttttcatgtgatggatgacttctattgcagccttgg |
288 |
Q |
| |
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|||||||| ||| || |||| || | |||| |||||| || || ||||||||||||||||||||||||||||||||||| | || || |
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| T |
21977139 |
cgatcatatgctatacctatatctagtttcaatgccacacacccctcacaacaacaagtctttgttttcatgtgatggatgacttctattgtaaccatga |
21977238 |
T |
|
| Q |
289 |
tgttatcaagaattgacctcctaggtacaaaggttgattgattat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
21977239 |
cattatcaagaattgacctcctaggtacaaaggctgactgattat |
21977283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 24410470 - 24410636
Alignment:
| Q |
7 |
cctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgaccaacgt |
106 |
Q |
| |
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|||| |||||||||||||||||||||| ||||| | ||||||| | |||||| | || |||||||| || | | |||||||||||||||||| | |
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| T |
24410470 |
cctccgcacaaataatgaacaaatacggggacatcgactctccttaacataaacctcgcacaagaataactaacctagctgattcattgttgaccaacat |
24410569 |
T |
|
| Q |
107 |
agaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttc |
173 |
Q |
| |
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|
| T |
24410570 |
agagtagtcaaccgactccacgcagatactcatccattgtatccatctatcattaaaactcattttc |
24410636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 14688277 - 14688171
Alignment:
| Q |
72 |
ataactggcccaaccgattcattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattt |
171 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| | ||||||| | ||| ||| ||||| |||||||||| |||||||| |||| ||||||||||| |
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|
| T |
14688277 |
ataactggcccaacaacttcattgttaaccaacacataatagtctacagactccaaacacatgctcatccaatggatccatttgtcatcaaagcccattt |
14688178 |
T |
|
| Q |
172 |
tcatcat |
178 |
Q |
| |
|
| ||||| |
|
|
| T |
14688177 |
taatcat |
14688171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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