View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14279_high_1 (Length: 381)
Name: NF14279_high_1
Description: NF14279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14279_high_1 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0056 (2 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 23777130 - 23776767
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaataacgtacatagtccctcaagt |
116 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
23777130 |
ggtatgccaacttcgatga--tggcaaatgtgcataatagtgcgtccgcatttgcagaacaaaaaaatccgttcacaattacgtacatagtccctcaagt |
23777033 |
T |
|
| Q |
117 |
tctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatt |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
23777032 |
tctagcattttcggtcaaagtactctactacccttaacaacagagtcgatgaatctgttaagacaacaaatggacgagagtaatcacaaaatggttaatt |
23776933 |
T |
|
| Q |
217 |
tgttgacacaacaaattggtactgtgt-actattgtgaagaagcgattaagcgattttgcgatttttctctcctagggtttcactcatcgccccttgtga |
315 |
Q |
| |
|
||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23776932 |
tgttgacacaaaaagttggtaccgtgtaactattgtgaagaagcgattaagcgattttgtgatttttctctcctagggtttcactcatcgccccttgtga |
23776833 |
T |
|
| Q |
316 |
gagtctgttttgtcgattagattgattttcaatcataatcgtgttcttttcttgtttttctcctga |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23776832 |
gagtctgttttgtcgattagattgattttcaatcttaatcgtgttcttttcttgtttttctcctga |
23776767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 27604357 - 27604559
Alignment:
| Q |
38 |
tggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtca |
133 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
27604357 |
tggcaaatgtacataatagtgcgtctgcatttgcagaccaagcaaacccgttcacaatgcacaacgtacatagtccctcaagttctagcatatttggtcg |
27604456 |
T |
|
| Q |
134 |
aagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaatt |
233 |
Q |
| |
|
| || ||||| | | || |||||||||||||||||| ||||||||||| |||| |||||||||| ||| ||||| | |||||||| |||||||||||| |
|
|
| T |
27604457 |
gaatactctaccaacattgacaacagattcgatgaatttgttaagacaaaaaatggatgagagtaaccacgaaatgattaatttgttaacacaacaaatt |
27604556 |
T |
|
| Q |
234 |
ggt |
236 |
Q |
| |
|
||| |
|
|
| T |
27604557 |
ggt |
27604559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 23802596 - 23802394
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||||| | ||| |||||| ||||||||||||||||||| | |||| ||| ||||| | |||||||| ||| ||||||||||||| |
|
|
| T |
23802596 |
ggtatgccaacttcgatga--tggaaaatgtacataatagtgcgtccgcattttcagaccaagcaaatccattcacaatgcacaacatacatagtccctc |
23802499 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
||||| |||||||| ||||||| || ||||| ||| ||||||||||||||||||||| ||||||| |||| |||| |||||||||||||| ||||||| |
|
|
| T |
23802498 |
gagttcgagcatttttggtcaaaatactctaccaccattaacaacagattcgatgaatttgttaaggcaacaaatggatgagagtaatcacgaaatggtt |
23802399 |
T |
|
| Q |
213 |
aattt |
217 |
Q |
| |
|
||||| |
|
|
| T |
23802398 |
aattt |
23802394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 24985657 - 24985804
Alignment:
| Q |
96 |
aacgtacatagtccctcaagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgaga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || ||||| || || |||||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
24985657 |
aacgtacatagtccctcaagttctagcattttcggtcggaatactctaccacggttgacaacagattcgatgaatttgttaagacaacaaatggatgaga |
24985756 |
T |
|
| Q |
196 |
gtaatcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
|||| ||| ||||||| |||| ||| ||||||||||||||||| |||| |
|
|
| T |
24985757 |
gtaaccacgaaatggttaattcgttaacacaacaaattggtaccgtgt |
24985804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 25597078 - 25596869
Alignment:
| Q |
38 |
tggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtca |
133 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||| ||| ||||| ||||||||| ||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
25597078 |
tggcaaatgtacataatagtgcgtccgcatttgaagaccaagcaaatatgttcacaatgcacaacatacatagtccctaaagttctagcatttttggtcg |
25596979 |
T |
|
| Q |
134 |
aagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaatt |
233 |
Q |
| |
|
|| || | || | |||||| ||||||||| |||| |||||| ||||| |||| ||||| |||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
25596978 |
aaatactatatcagtcttaacgacagattcggtgaacttgttaacacaacaaatggatgagggtaatcacgaaatggttaatttgttgacacaagaaatt |
25596879 |
T |
|
| Q |
234 |
ggtactgtgt |
243 |
Q |
| |
|
||||| |||| |
|
|
| T |
25596878 |
ggtaccgtgt |
25596869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 22800834 - 22800636
Alignment:
| Q |
49 |
cataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtcaaagtattctac |
144 |
Q |
| |
|
|||||||||| |||| ||| || ||| ||| |||||||||||||||| | | ||||||||||||||| |||||||||||| ||| || || ||||| |
|
|
| T |
22800834 |
cataatagtgtgtccacatttgtagatcaagcaaattcgttcacaatgcacaccatacatagtccctcaatttctagcatttttggttgaaatactctac |
22800735 |
T |
|
| Q |
145 |
tacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
|||| |||||||||||||||| ||| | ||||| |||| |||| ||||||||||| || ||||||| |||||||| ||| || |||||||||| |||| |
|
|
| T |
22800734 |
cacccgtaacaacagattcgattaattttttaaggcaacaaatggatgagagtaattacgaaatggttaatttgtttacaaaaaaaattggtaccgtgt |
22800636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 20270775 - 20270742
Alignment:
| Q |
205 |
aaatggtcaatttgttgacacaacaaattggtac |
238 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
20270775 |
aaatggtcaatatgttgacacaacaaattggtac |
20270742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 7965084 - 7964875
Alignment:
| Q |
38 |
tggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtca |
133 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| ||| ||||| ||||||||| |||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
7965084 |
tggcaaatgtacataatagtgcgtccgcatttgcagaccaagcaaatctgttcacaattcacaacgcacatagtccctcaagttctaacatttttggtcg |
7964985 |
T |
|
| Q |
134 |
aagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaatt |
233 |
Q |
| |
|
|| || ||||| | |||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
7964984 |
aaataatctaccagtcttaacgacagattcaatgaacttgttaagacaacaaatggatgagagtaatcacgaaatggttaatttgttgacacaacaaatt |
7964885 |
T |
|
| Q |
234 |
ggtactgtgt |
243 |
Q |
| |
|
|||||||||| |
|
|
| T |
7964884 |
ggtactgtgt |
7964875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 32298219 - 32298323
Alignment:
| Q |
270 |
ttttgcgatttttctctcctagggtttcactcatcgccccttgtgagagtctgttttgtcgattagattgattttcaatcataatcgtgttcttttcttg |
369 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32298219 |
ttttgcgatttttctctcctacggtttcactcatcgccccttgtgagagtctgttttgtcgattagattgattttcaatcttaatcgtgttcttttcttg |
32298318 |
T |
|
| Q |
370 |
ttttt |
374 |
Q |
| |
|
||||| |
|
|
| T |
32298319 |
ttttt |
32298323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 18099165 - 18099393
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||||| | ||| |||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
18099165 |
ggtatgccaacttcgatga--tggaaaatgtacatcatagtgcgtccgcatttgcagatcaagcaaatatgttcacaatgcacaacgtacattgtccctc |
18099262 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
||||||||| ||||| |||| | || | ||| ||| || || ||| ||||||||||| |||||||||||| |||| |||||| ||| ||| ||||||| |
|
|
| T |
18099263 |
aagttctagaatttttggtcggaatactataccaccgttgacgacatattcgatgaatttgttaagacaacaaatggatgagactaaccacgaaatggtt |
18099362 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
|||||||| || |||||||||||||| |||| |
|
|
| T |
18099363 |
aatttgttaacgcaacaaattggtaccgtgt |
18099393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 14952736 - 14952592
Alignment:
| Q |
99 |
gtacatagtccctcaagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagta |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| | || ||||| || |||||| |||| |||||| |||||||||||| |||| ||||||||| |
|
|
| T |
14952736 |
gtacatattccctcaagttctagcatttttggtcggaatactctaccgttgttgacaacaaattccatgaatttgttaagacaacaaatggatgagagta |
14952637 |
T |
|
| Q |
199 |
atcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
| ||| ||||||| |||||||| || || |||||||||| |||| |
|
|
| T |
14952636 |
accacgaaatggttaatttgttaacgtaataaattggtaccgtgt |
14952592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 15380329 - 15380185
Alignment:
| Q |
99 |
gtacatagtccctcaagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagta |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| | || ||||| || |||||| |||| |||||| |||||||||||| |||| ||||||||| |
|
|
| T |
15380329 |
gtacatattccctcaagttctagcatttttggtcggaatactctaccgttgttgacaacaaattccatgaatttgttaagacaacaaatggatgagagta |
15380230 |
T |
|
| Q |
199 |
atcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
| ||| ||||||| |||||||| || || |||||||||| |||| |
|
|
| T |
15380229 |
accacgaaatggttaatttgttaacgtaataaattggtaccgtgt |
15380185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 37421 - 37193
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||| |||| |||||||||||| |
|
|
| T |
37421 |
ggtatgccaacttcgatga--tggaaaatgtgcataatagtgtgtccgcatctgcagaccaagcaaatccgttcacaactcacaacgcacatagtccctc |
37324 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
||||||||||||||| ||||||| || ||||| | |||| ||| |||||||||||| |||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
37323 |
aagttctagcatttttggtcaaaatactctaccagtcttatcaagtgattcgatgaatttgttaagacaacaaatagatgagagtaatcacgaaatggtt |
37224 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
||||| ||||||||| |||||||||| |||| |
|
|
| T |
37223 |
aatttattgacacaagaaattggtaccgtgt |
37193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 42 - 237
Target Start/End: Complemental strand, 11426969 - 11426770
Alignment:
| Q |
42 |
aaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtcaaagt |
137 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||||| ||| ||||| |||||||||| ||| |||||||||||||||||||||||||||| |||| || | |
|
|
| T |
11426969 |
aaatgtacataaaagtgcttccgcatttgcagatcaagcaaatccgttcacaatgcacaacatacatagtccctcaagttctagcatttttggtcgaaat |
11426870 |
T |
|
| Q |
138 |
attctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattggta |
237 |
Q |
| |
|
| ||||| ||| || | ||||||||| |||||| |||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
11426869 |
actctaccaccgttgaaaacagattcaatgaatttgttaagacaacacatggatgagagtaatcacgaaatggttaatttgttgacacaacaaattggta |
11426770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 16924620 - 16924474
Alignment:
| Q |
96 |
aacgtacatagtccctcaagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgaga |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | || ||||| ||| || |||||| ||| ||||||| |||||||||||| |||| |||||| |
|
|
| T |
16924620 |
aacgtacatagtccctcaagttctagcatttttggtcggaatactctaccaccgttgacaacacatt-gatgaatttgttaagacaacaaatggatgaga |
16924522 |
T |
|
| Q |
196 |
gtaatcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
16924521 |
gtaaccacgaaatggttaatttgttgacacaaaaaattggtaccgtgt |
16924474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 22927700 - 22927574
Alignment:
| Q |
38 |
tggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtca |
133 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||| | ||| ||||| |||||||| | |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22927700 |
tggcaaatgtgcataataatgcaaccgcatttgcacaccaagcaaatccgttcacagtgcacaacgtacatattccctcaagttctagcattttcggtca |
22927601 |
T |
|
| Q |
134 |
aagtattctactacccttaacaacaga |
160 |
Q |
| |
|
||||| ||||| ||||||||||||||| |
|
|
| T |
22927600 |
aagtactctaccacccttaacaacaga |
22927574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 12811844 - 12812046
Alignment:
| Q |
38 |
tggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtca |
133 |
Q |
| |
|
|||||||| | |||||||||| |||||||| |||||| ||| ||||| |||||||||| ||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
12811844 |
tggcaaatatacataatagtgtgtccgcatttgcagatcaatcaaatccgttcacaatgcacaacatacatagtcccttaagttctagcatttttggtcg |
12811943 |
T |
|
| Q |
134 |
aagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaatt |
233 |
Q |
| |
|
|| || ||||| ||| || ||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||| |||||||| |||| ||||||| |
|
|
| T |
12811944 |
aaatactctaccaccgttgtcaacagattcgatgaatttgttaagacaacaaatggatgagagtaatcacgaaatggttaatttgttaacacgacaaatt |
12812043 |
T |
|
| Q |
234 |
ggt |
236 |
Q |
| |
|
||| |
|
|
| T |
12812044 |
ggt |
12812046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 10159703 - 10159910
Alignment:
| Q |
40 |
gcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtcaaa |
135 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||| ||| |||| |||||| ||| |||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
10159703 |
gcaaatgtacataatagtgtgtccgcatttgcagaccaagaaaatccgttcataatgcacaacgtacatagtccctcaagttctagcatttttggtcgga |
10159802 |
T |
|
| Q |
136 |
gtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattgg |
235 |
Q |
| |
|
|| ||||| | | || |||||||||||||||||| |||||||||||| | || | |||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
10159803 |
atactctaccaacgttgacaacagattcgatgaatttgttaagacaacaattggacgagagtaaccacaaaatggttaatttgttaacacaacaaattgg |
10159902 |
T |
|
| Q |
236 |
tactgtgt |
243 |
Q |
| |
|
||| |||| |
|
|
| T |
10159903 |
taccgtgt |
10159910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 17024248 - 17024048
Alignment:
| Q |
42 |
aaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtcaaagt |
137 |
Q |
| |
|
|||| ||||||||||||||||| ||| | |||| ||||||||| |||||||||| ||| |||||||||| ||||||||||||||| |||| || | |
|
|
| T |
17024248 |
aaatttgcataatagtgcgtccacattttcagaccaaacaaatccgttcacaattcacaacacacatagtccccaaagttctagcatttttggtcgaaat |
17024149 |
T |
|
| Q |
138 |
attctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattggta |
237 |
Q |
| |
|
| ||||| | ||||| ||| ||||||||||| |||||||||||| |||| ||||||||||||| ||||||| |||| |||| ||||||||||||||| |
|
|
| T |
17024148 |
actctaccagtcttaaaaactaattcgatgaatttgttaagacaacaaatggatgagagtaatcatgaaatggttaattcgttggcacaacaaattggta |
17024049 |
T |
|
| Q |
238 |
c |
238 |
Q |
| |
|
| |
|
|
| T |
17024048 |
c |
17024048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 25401005 - 25400778
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaata-acgtacatagtccctcaag |
115 |
Q |
| |
|
|||||||||||||||| | |||||||| | |||||||||| |||||||| |||||| ||| ||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
25401005 |
ggtatgccaacttcgatga--tggcaaatctacataatagtgtgtccgcatttgcagaccaagcaaatccgttcacaatgcacgtacatggtccctcaag |
25400908 |
T |
|
| Q |
116 |
ttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagag--taatcacaaaatggtca |
213 |
Q |
| |
|
||||||||||| |||| | || ||||| | | || ||||||||||| |||||| ||||||||| || |||| | ||||| ||| ||||||||||| | |
|
|
| T |
25400907 |
ttctagcatttctggtcggaatactctaccaacgttgacaacagattcaatgaatttgttaagacgacaaatggacgagagtataaccacaaaatggtta |
25400808 |
T |
|
| Q |
214 |
atttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
||||||| ||| |||||||| |||| |||| |
|
|
| T |
25400807 |
atttgttaacataacaaatttgtaccgtgt |
25400778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 21291897 - 21292125
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||||| |||| | | |||| ||| ||||| ||||||| || ||| |||||||||| || |
|
|
| T |
21291897 |
ggtatgccaacttcgatga--tggcaaatgtacataatagtgcttccgttttttcagaccaagcaaatccgttcactatgcacaacatacatagtccttc |
21291994 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
||||| ||| ||||| |||| | || ||||| ||| ||||||||||||||||||||| |||| ||| ||| |||| |||||| ||| ||| ||||||| |
|
|
| T |
21291995 |
aagttatagtatttttggtcggaatactctaccaccattaacaacagattcgatgaatgtgttgagataacaaatggatgagactaaccacgaaatggtt |
21292094 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
| |||||| || |||||||||||||| |||| |
|
|
| T |
21292095 |
agtttgttaacgcaacaaattggtacagtgt |
21292125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 22805904 - 22805682
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||||| | || ||||||| |||||||||||||| |||| |||||| ||| ||||| |||||||||| ||| |||||||||| || |
|
|
| T |
22805904 |
ggtatgccaacttcgat--aatgacaaatgtacataatagtgcgtcagcatttgcagaccaagcaaatccgttcacaatgcacaacatacatagtccttc |
22805807 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
||||||||||||||| |||| || || ||||| | |||||| |||| ||||||||| |||||| ||||| ||| |||||||||||||| ||||||| |
|
|
| T |
22805806 |
aagttctagcatttttggtcgaaatactctaccagtcttaacgacaggttcgatgaacttgttaatacaacaaatagatgagagtaatcacgaaatggtt |
22805707 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggta |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22805706 |
aatttgttgacacaacaaattggta |
22805682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 24924895 - 24924971
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat |
95 |
Q |
| |
|
|||||||||||||||| | || |||||| ||||||||||||||||||| |||||| ||| ||||| |||||||||| |
|
|
| T |
24924895 |
ggtatgccaacttcgatga--tgacaaatgcacataatagtgcgtccgcatttgcagaccaagcaaatccgttcacaat |
24924971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 34618 - 34390
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||||| | |||| ||||| |||||||||||||| || |||||| || ||||| |||||||||| || |||||||||||||| |
|
|
| T |
34618 |
ggtatgccaacttcgatga--tggccaatgtacataatagtgcgtctagatttgcagattaagcaaatccgttcacaatgcacaatgtacatagtccctc |
34521 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
||||||||||||||| |||| | || |||| | || |||||||||| ||||||| |||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
34520 |
aagttctagcatttttggtcggaataccctaccaatgttgacaacagatttgatgaatttgttaagacaacaaatggatgagagtaaccacaaaatggtt |
34421 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |
|
|
| T |
34420 |
aatttgttaacacaacaaattggtaccgtgt |
34390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 22263210 - 22262987
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
||||| |||||||||||| ||||| ||| |||||||||||||||| | ||||| |||| ||||| ||||||| || ||||||||||||||||| |
|
|
| T |
22263210 |
ggtataccaacttcgacga--tggcaggtgtacataatagtgcgtccgtttttgcaggacaagcaaatccgttcaccatgcacaacgtacatagtccctc |
22263113 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
|||||||||||| || ||| | || ||||| ||| || |||||| ||||||||||| |||||||||||| |||| |||||||||| ||| | ||||| |
|
|
| T |
22263112 |
aagttctagcatatttggttggaatactctaccaccgttgacaacaaattcgatgaatttgttaagacaacaaatggatgagagtaaccacgatatggtt |
22263013 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtac |
238 |
Q |
| |
|
|||||||| || |||||||||||||| |
|
|
| T |
22263012 |
aatttgttaacgcaacaaattggtac |
22262987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 12149611 - 12149783
Alignment:
| Q |
69 |
tgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtcaaagtattctactacccttaacaacagattcg |
164 |
Q |
| |
|
|||||| ||| ||||| |||||||||| ||| ||||||||| |||||||||||||||||| |||| || || ||||| | |||||| |||||||| |
|
|
| T |
12149611 |
tgcagaccaagcaaatccgttcacaatgcacaacatacatagtctctcaagttctagcatttttggtcgaaatactctaccagtcttaacgacagattct |
12149710 |
T |
|
| Q |
165 |
atgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattggta |
237 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||||||| ||||||| ||||| |||||||||||||| |||| |
|
|
| T |
12149711 |
atgaacttgttaagacaacaaatggatgagagtaatcatgaaatggttaatttattgacacaacaaatcggta |
12149783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 18377353 - 18377554
Alignment:
| Q |
41 |
caaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctcaagttctagcattttcggtcaaag |
136 |
Q |
| |
|
||||||| ||||||||||| ||| | | |||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
18377353 |
caaatgtacataatagtgcttccttttttacagaccaagcaaatccgttcacaatgcacaacgtacatagtccctcaagttctagcatttttggtcggaa |
18377452 |
T |
|
| Q |
137 |
tattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattggt |
236 |
Q |
| |
|
|| ||||| ||| | |||||| ||||||||||| |||||||||||| ||| |||||||||| | |||||| | |||||||| || |||||||||||| |
|
|
| T |
18377453 |
tactctaccaccgtagacaacaaattcgatgaatttgttaagacaacaaatagatgagagtaaccttaaaatgcttaatttgttaacgcaacaaattggt |
18377552 |
T |
|
| Q |
237 |
ac |
238 |
Q |
| |
|
|| |
|
|
| T |
18377553 |
ac |
18377554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 23011449 - 23011596
Alignment:
| Q |
96 |
aacgtacatagtccctcaagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgaga |
195 |
Q |
| |
|
|||||||||||||||||||||| || ||| || |||| | || || || ||| || |||||| ||| ||||||| |||||||||||| |||| |||||| |
|
|
| T |
23011449 |
aacgtacatagtccctcaagttatatcatatttggtcggaatagtcgaccaccgttgacaacatatttgatgaatttgttaagacaacaaatggatgaga |
23011548 |
T |
|
| Q |
196 |
gtaatcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
|||| ||| | ||||| |||| ||| ||||||||||||| ||| |||| |
|
|
| T |
23011549 |
gtaaccacgatatggttaattcgttaacacaacaaattgataccgtgt |
23011596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 50647 - 50870
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||| ||| |||||| ||| ||||||||||| ||||| | || ||||||| ||||| ||||||| || ||||||||||||||||| |
|
|
| T |
50647 |
ggtatgccaacttcaacga--tggcaagtgtacataatagtgcatccgcttttgtagaacaagcaaatccgttcaccatgcacaacgtacatagtccctc |
50744 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
|||||||||||| || |||| | || || || | | || | |||||||| ||||||| ||||||||||| |||| |||||||||| || | ||| | |
|
|
| T |
50745 |
aagttctagcatatttggtcggaatactccaccatcgttgataacagatttgatgaatttgttaagacaaaaaatggatgagagtaaccatgatatgatt |
50844 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtac |
238 |
Q |
| |
|
|||||||| |||||| |||||||||| |
|
|
| T |
50845 |
aatttgttaacacaaaaaattggtac |
50870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 55748 - 55971
Alignment:
| Q |
17 |
ggtatgccaacttcgacggactggcaaatgtgcataatagtgcgtccgcatctgcagaacaaacaaattcgttcacaat----aacgtacatagtccctc |
112 |
Q |
| |
|
|||||||||||||| ||| |||||| ||| ||||||||||| ||||| | || ||||||| ||||| ||||||| || ||||||||||||||||| |
|
|
| T |
55748 |
ggtatgccaacttcaacga--tggcaagtgtacataatagtgcatccgcttttgtagaacaagcaaatccgttcaccatgcacaacgtacatagtccctc |
55845 |
T |
|
| Q |
113 |
aagttctagcattttcggtcaaagtattctactacccttaacaacagattcgatgaatctgttaagacaacgaatgcatgagagtaatcacaaaatggtc |
212 |
Q |
| |
|
|||||||||||| || |||| | || || || | | || | |||||||| ||||||| ||||||||||| |||| |||||||||| || | ||| | |
|
|
| T |
55846 |
aagttctagcatatttggtcggaatactccaccatcgttgataacagatttgatgaatttgttaagacaaaaaatggatgagagtaaccatgatatgatt |
55945 |
T |
|
| Q |
213 |
aatttgttgacacaacaaattggtac |
238 |
Q |
| |
|
|||||||| |||||| |||||||||| |
|
|
| T |
55946 |
aatttgttaacacaaaaaattggtac |
55971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 47147 - 47217
Alignment:
| Q |
173 |
gttaagacaacgaatgcatgagagtaatcacaaaatggtcaatttgttgacacaacaaattggtactgtgt |
243 |
Q |
| |
|
||||||||||| |||| ||||||| || || ||||||| |||||||| |||||| |||||||||| |||| |
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|
| T |
47147 |
gttaagacaacaaatggatgagagcaaccatgaaatggttaatttgttaacacaataaattggtacagtgt |
47217 |
T |
|
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