View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1427_high_2 (Length: 249)
Name: NF1427_high_2
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1427_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 18569095 - 18568855
Alignment:
| Q |
9 |
ataatactgaatgaatcatctggatcaagcttagaaagagcagctgataatgcattctttgtgtcatcaattagctttcctcgcatgcttccacttatgt |
108 |
Q |
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| T |
18569095 |
ataatactaaatgaatcatcaggatcaagcttagacagagcagctgataatgcattctttgtgtcatcaattagctttcctcgcatgcttccacttatgt |
18568996 |
T |
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| Q |
109 |
cgataacgaatacaatgtctttcctgaatacctagcagattcgataaacttctcagcaagtgcttatgaaaaataagtattaaaaacatttactacatat |
208 |
Q |
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| T |
18568995 |
cgataacgaatacaatgtctttcctgaatacctagcagattcgataaacttctcagcaagtacttatgaaaaataagtattaaaaacatttactacatat |
18568896 |
T |
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| Q |
209 |
tttgtaaagaactgctattggtataagttgaaatcaacatc |
249 |
Q |
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| T |
18568895 |
tttgtaaagaactgctattggtataagttgaaatcaacatc |
18568855 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 51868112 - 51868195
Alignment:
| Q |
59 |
tgcattctttgtgtcatcaattagctt-tcctcgcatgcttccacttatgtcgataacgaatacaatgtctttcctgaataccta |
142 |
Q |
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|||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||| ||||| ||||| || |||||||||| |
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| T |
51868112 |
tgcattctttgtgtcatccattagcttctcct-gcatgcttccactgatgtcgataatgaatattatgtcctttttgaataccta |
51868195 |
T |
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