View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1427_low_1 (Length: 595)

Name: NF1427_low_1
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1427_low_1
NF1427_low_1
[»] chr6 (2 HSPs)
chr6 (18-374)||(1306437-1306793)
chr6 (26-132)||(1310946-1311052)
[»] chr3 (4 HSPs)
chr3 (392-587)||(31595714-31595909)
chr3 (392-517)||(31595134-31595245)
chr3 (393-530)||(25081458-25081595)
chr3 (421-474)||(38018654-38018707)
[»] chr1 (8 HSPs)
chr1 (393-587)||(39869332-39869526)
chr1 (397-517)||(39869916-39870035)
chr1 (392-574)||(36681525-36681710)
chr1 (393-517)||(36682190-36682315)
chr1 (26-125)||(41905396-41905495)
chr1 (392-442)||(15601467-15601517)
chr1 (450-530)||(33082208-33082287)
chr1 (393-429)||(19790840-19790876)
[»] chr8 (7 HSPs)
chr8 (392-574)||(37550807-37550992)
chr8 (392-517)||(37550201-37550327)
chr8 (429-515)||(22589711-22589798)
chr8 (393-515)||(39320931-39321054)
chr8 (429-515)||(7089783-7089870)
chr8 (393-511)||(23017264-23017384)
chr8 (399-517)||(16664639-16664758)
[»] chr4 (4 HSPs)
chr4 (392-574)||(33351975-33352160)
chr4 (393-517)||(33351370-33351495)
chr4 (395-453)||(39832014-39832072)
chr4 (401-453)||(49574732-49574784)
[»] chr2 (2 HSPs)
chr2 (26-125)||(38479185-38479284)
chr2 (392-515)||(42112296-42112420)
[»] scaffold0434 (1 HSPs)
scaffold0434 (429-517)||(12742-12831)
[»] chr5 (1 HSPs)
chr5 (395-438)||(10470062-10470105)
[»] scaffold0285 (1 HSPs)
scaffold0285 (392-462)||(17518-17588)
[»] scaffold0069 (1 HSPs)
scaffold0069 (393-442)||(15013-15062)
[»] chr7 (1 HSPs)
chr7 (393-438)||(45432966-45433011)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 1306437 - 1306793
Alignment:
Q  18 caattcagcatctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtca 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1306437 caattcagcatctccaagatcaacaaccaaatgtttcatatcctcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtca 1306536  T
Q  118 ggtttttcgtagactattgcttgagagcttcaatcttagtttagttggtcatgaaaatggtgtgtgataacatttgtagattatgatgtgtttatcattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1306537 ggtttttcgtagactattgcttgagagcttcaatcttagtttagttggtcatgaaaatggtgtgtgataacatttgtagattatgatgtgtttatcattt 1306636  T
Q  218 tcttaaaacaaacatataatactgatcttttaatttaattttgaattttaaacctgccatttatatttaactatatatcttaaaaaatatatacaccatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1306637 tcttaaaacaaacatataatactgatcttttaatttaattttgaattttaaacctgccatttatatttaactatatatcttaaaaaatatatacaccatt 1306736  T
Q  318 gtaaatttcaatgtgagatcatccaagctagatatttgtgtacatgatcattgaatg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1306737 gtaaatttcaatgtgagatcatccaagctagatatttgtgtacatgatcattgaatg 1306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 1310946 - 1311052
Alignment:
Q  26 catctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtttttc 125  Q
    |||||||||||||| ||| |||| ||| |||||| ||||||| |||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  1310946 catctccaagatcagcaatcaaaggttccatatcatcagtatcttcatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttc 1311045  T
Q  126 gtagact 132  Q
     ||||||    
T  1311046 atagact 1311052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 392 - 587
Target Start/End: Complemental strand, 31595909 - 31595714
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaa 491  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31595909 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaa 31595810  T
Q  492 atccactaaaaccatgtgattaattttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaacccctttgct 587  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31595809 acccactaaaaccatgtgattaattttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaaccccattgct 31595714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 392 - 517
Target Start/End: Original strand, 31595134 - 31595245
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaa 491  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||              ||||||||||||||||||||||||||    
T  31595134 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaacc--------------aacggttaagatgcttcagctttaaa 31595219  T
Q  492 atccactaaaaccatgtgattaattt 517  Q
    | ||||||||||||||||||||||||    
T  31595220 acccactaaaaccatgtgattaattt 31595245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 393 - 530
Target Start/End: Complemental strand, 25081595 - 25081458
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagctttaa 490  Q
    ||||||||||||||||||| |||| ||| | |||||| ||| ||||| | ||| | ||||||| |||||||||||||||||||||||| |||||||||||    
T  25081595 agggcatatcaagtgagaggagttgttatagtgagag-atgagaggattgatttataaccatcagattaaaaccaacggttaagatgctttcagctttaa 25081497  T
Q  491 aatccactaaaaccatgtgattaattttcatcttcttctc 530  Q
    |||  | ||||||||||||||| ||||||  |||||||||    
T  25081496 aattaattaaaaccatgtgatt-attttctccttcttctc 25081458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Original strand, 38018654 - 38018707
Alignment:
Q  421 aatgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaa 474  Q
    ||||||||| || ||||||||||||||| ||||| ||||||| || ||||||||    
T  38018654 aatgagagggtgagaggagtaattaacagccatccgattaaatcctacggttaa 38018707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 393 - 587
Target Start/End: Original strand, 39869332 - 39869526
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaaa 492  Q
    |||||||||||| | |||  ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  39869332 agggcatatcaaattagatgagtttttaaatgagagggtgagaggagtaattaacaactatttgattaaaaccaatggttaagatgcttcagctttaaaa 39869431  T
Q  493 tccactaaaaccatgtgattaattttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaacccctttgct 587  Q
    |  | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39869432 tatattaaaatcatgtgattaattttcatcttcttctttgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaaccccattgct 39869526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 397 - 517
Target Start/End: Complemental strand, 39870035 - 39869916
Alignment:
Q  397 catatcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaaatcca 496  Q
    ||||||||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||    
T  39870035 catatcaagtgagaggagtttttaaatgagagggtgagacgagtaattaacaac-atctgattaaaaccaacggttaagatgcttcagatttaaaaccca 39869937  T
Q  497 ctaaaaccatgtgattaattt 517  Q
    |||||||||||||||||||||    
T  39869936 ctaaaaccatgtgattaattt 39869916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 392 - 574
Target Start/End: Original strand, 36681525 - 36681710
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagcttta 489  Q
    |||| ||||||||||||||| |||| ||| | |||||| ||| ||||||||||||| ||||||  ||||||| |||||||||||||||| ||||||||||    
T  36681525 gaggacatatcaagtgagaggagttgttatagtgagag-atgagaggagtaattaataaccattcgattaaatccaacggttaagatgctttcagcttta 36681623  T
Q  490 aaatccactaaaaccatgtgattaatt---ttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctc 574  Q
    ||||  | |||||||||||||||||||   ||  | |||||||  |||| ||||||| |||||||| || ||||||||||||||||||    
T  36681624 aaatataataaaaccatgtgattaattcccttatttttcttcttcgtactgtttggaattcttttg-ctggttcctatgaatttcctc 36681710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 393 - 517
Target Start/End: Complemental strand, 36682315 - 36682190
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagctttaa 490  Q
    |||||||||||| |||||| |||| ||| | |||||| ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |||| ||||||    
T  36682315 agggcatatcaaatgagaggagttgttatagtgagag-atgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaa 36682217  T
Q  491 aatccactaaaaccatgtgattaattt 517  Q
    |||  ||||||||||| ||||||||||    
T  36682216 aatatactaaaaccatatgattaattt 36682190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 41905396 - 41905495
Alignment:
Q  26 catctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtttttc 125  Q
    |||| ||||||||| ||| |||| |||||||||| ||   || | |||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  41905396 catccccaagatcagcaagcaaaggtttcatatcatcttcatctccatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttc 41905495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 442
Target Start/End: Complemental strand, 15601517 - 15601467
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaa 442  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  15601517 gagggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaa 15601467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 33082208 - 33082287
Alignment:
Q  450 ccatctgattaaaaccaacggttaagatgc-ttcagctttaaaatccactaaaaccatgtgattaattttcatcttcttctc 530  Q
    ||||| |||||||| ||||||||||||| | |||| |||||||| | | ||||||||||||||| |||||| ||||||||||    
T  33082208 ccatcagattaaaatcaacggttaagatcctttcaactttaaaaccaattaaaaccatgtgatt-attttc-tcttcttctc 33082287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 19790840 - 19790876
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaatgagagg 429  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  19790840 agggcatatcaagtgagaggagttttaaaatgagagg 19790876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 392 - 574
Target Start/End: Complemental strand, 37550992 - 37550807
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagcttta 489  Q
    |||| ||||||||||||||| |||| ||| | |||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||    
T  37550992 gaggacatatcaagtgagaggagttgttatagtgagag-atgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagcttta 37550894  T
Q  490 aaatccactaaaaccatgtgattaatt---ttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctc 574  Q
    ||||  | |||||||||||||||||||   ||  | |||||||  |||| ||||||| |||||||| || ||||||||||||||||||    
T  37550893 aaatataataaaaccatgtgattaattcccttatttttcttcttcgtactgtttggaattcttttg-ctggttcctatgaatttcctc 37550807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 392 - 517
Target Start/End: Original strand, 37550201 - 37550327
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagcttta 489  Q
    ||||||||||||| |||||| |||| ||| | |||||| ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |||| |||||    
T  37550201 gagggcatatcaaatgagaggagttgttatagtgagag-atgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaacttta 37550299  T
Q  490 aaatccactaaaaccatgtgattaattt 517  Q
    ||||  ||||||||||| ||||||||||    
T  37550300 aaatatactaaaaccatatgattaattt 37550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 515
Target Start/End: Original strand, 22589711 - 22589798
Alignment:
Q  429 gatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagctttaaaatccactaaaaccatgtgattaat 515  Q
    |||| ||||||||||||||| |||||  |||||||||||| |||||||||| ||||||||||||| | | ||||||||||||||||||    
T  22589711 gatgagaggagtaattaacatccatcacattaaaaccaacagttaagatgctttcagctttaaaacctattaaaaccatgtgattaat 22589798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 515
Target Start/End: Original strand, 39320931 - 39321054
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagctttaa 490  Q
    ||||||||||||||||||  | || ||| | |||||| ||| |||||||||||| |||||||| ||||||| |||| || |||||||| |||||||||||    
T  39320931 agggcatatcaagtgagatgacttgttatagtgagag-atgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagctttaa 39321029  T
Q  491 aatccactaaaaccatgtgattaat 515  Q
    |||  |||||||||| |||||||||    
T  39321030 aatatactaaaaccacgtgattaat 39321054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 515
Target Start/End: Complemental strand, 7089870 - 7089783
Alignment:
Q  429 gatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttc-agctttaaaatccactaaaaccatgtgattaat 515  Q
    |||| ||| |||||||| |||||||| ||||||| |||| || ||||||||||  |||||||||||  ||||||||||||||||||||    
T  7089870 gatgagagaagtaattagcaaccatccgattaaatccaatggctaagatgcttttagctttaaaatatactaaaaccatgtgattaat 7089783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 23017264 - 23017384
Alignment:
Q  393 agggcatatcaa-gtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagcttta 489  Q
    |||||||||||| ||||||| |||| ||| | |||||| ||| |||||| ||||| ||  |||| |||||||||||||||||||||||| |||| |||||    
T  23017264 agggcatatcaaagtgagaggagttgttatagtgagag-atgagaggagcaattatcaggcatcagattaaaaccaacggttaagatgctttcaacttta 23017362  T
Q  490 aaatccactaaaaccatgtgat 511  Q
    ||| | | ||||||||||||||    
T  23017363 aaaccaattaaaaccatgtgat 23017384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 517
Target Start/End: Original strand, 16664639 - 16664758
Alignment:
Q  399 tatcaagtgagagaagttttta-aatgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagctttaaaatcca 496  Q
    |||||||| |||| | |||||| ||||||||| || ||||||| |||| || ||||||||||||| ||||||||||| |||| || | | |||||| |      
T  16664639 tatcaagttagaggactttttataatgagagg-tgagaggagtgattagcatccatctgattaaatccaacggttaaaatgctttgatcattaaaacctg 16664737  T
Q  497 ctaaaaccatgtgattaattt 517  Q
     ||||||||||||||||||||    
T  16664738 ttaaaaccatgtgattaattt 16664758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 392 - 574
Target Start/End: Complemental strand, 33352160 - 33351975
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagcttta 489  Q
    |||| ||||||||||||||  |||| ||| | |||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||    
T  33352160 gaggacatatcaagtgagatgagttgttatagtgagag-atgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagcttta 33352062  T
Q  490 aaatccactaaaaccatgtgattaatt---ttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctc 574  Q
    ||||  | |||||||||||||||||||   ||  | |||||||  |||| ||||||| |||||||| || ||||||||||||||||||    
T  33352061 aaatataataaaaccatgtgattaattcccttatttttcttcttcgtactgtttggaattcttttg-ctggttcctatgaatttcctc 33351975  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 393 - 517
Target Start/End: Original strand, 33351370 - 33351495
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagctttaa 490  Q
    |||||||||||| |||||| |||| ||| | |||||| ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |||| ||||||    
T  33351370 agggcatatcaaatgagaggagttgttatagtgagag-atgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaa 33351468  T
Q  491 aatccactaaaaccatgtgattaattt 517  Q
    |||  ||||||||||| ||||||||||    
T  33351469 aatatactaaaaccatatgattaattt 33351495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 39832072 - 39832014
Alignment:
Q  395 ggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccat 453  Q
    ||||| ||||||||||| | |||||||||||||||||| ||||| | ||||| ||||||    
T  39832072 ggcatttcaagtgagagcactttttaaatgagaggatgagaggactcattaataaccat 39832014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 49574784 - 49574732
Alignment:
Q  401 tcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccat 453  Q
    |||| |||||| | ||||||||||||||| || ||||||||| ||||||||||    
T  49574784 tcaaatgagaggactttttaaatgagagggtgagaggagtaaataacaaccat 49574732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 38479185 - 38479284
Alignment:
Q  26 catctccaagatcaacaaccaaatgtttcatatcgtcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtttttc 125  Q
    |||| ||||||||| |||||||| |||||||||| || |||| |||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  38479185 catccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttc 38479284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 515
Target Start/End: Complemental strand, 42112420 - 42112296
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaa-tgagaggatgggaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcagcttta 489  Q
    |||||||||||||||||||| | || ||| | |||||| ||| |||||||||||| |||||||| ||||||| |||| || |||||||| ||||||||||    
T  42112420 gagggcatatcaagtgagaggacttcttatagtgagag-atgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagcttta 42112322  T
Q  490 aaatccactaaaaccatgtgattaat 515  Q
    ||||  ||||||||||||||||||||    
T  42112321 aaatatactaaaaccatgtgattaat 42112296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 429 - 517
Target Start/End: Complemental strand, 12831 - 12742
Alignment:
Q  429 gatgggaggagtaattaacaaccatctgattaaaaccaacggttaagat-gcttcagctttaaaatccactaaaaccatgtgattaattt 517  Q
    |||| |||||| |||||||||||||| ||||||| |||| ||||||||| | |||| |||||||||  ||||||||||||||||||||||    
T  12831 gatgagaggagcaattaacaaccatccgattaaatccaatggttaagatggtttcaactttaaaatatactaaaaccatgtgattaattt 12742  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 10470062 - 10470105
Alignment:
Q  395 ggcatatcaagtgagagaagtttttaaatgagaggatgggagga 438  Q
    ||||||||||||||||| | |||||||||||||||||| |||||    
T  10470062 ggcatatcaagtgagaggattttttaaatgagaggatgagagga 10470105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 17588 - 17518
Alignment:
Q  392 gagggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaattaacaaccatctgattaaa 462  Q
    |||||||| |||| |||||| | |||||||||||||||||| ||||||| | ||| ||||||  |||||||    
T  17588 gagggcatttcaaatgagaggattttttaaatgagaggatgagaggagttaataagaaccattagattaaa 17518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 15013 - 15062
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaatgagaggatgggaggagtaa 442  Q
    |||||||| |||||| ||||  |||||||||||||||||| |||||||||    
T  15013 agggcatagcaagtgtgagagctttttaaatgagaggatgagaggagtaa 15062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 45433011 - 45432966
Alignment:
Q  393 agggcatatcaagtgagagaagtttttaaatgagaggatgggagga 438  Q
    ||||||| ||||||||||| | |||||||||||||||||| |||||    
T  45433011 agggcatttcaagtgagaggattttttaaatgagaggatgagagga 45432966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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