View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1427_low_2 (Length: 447)
Name: NF1427_low_2
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1427_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 26099579 - 26099994
Alignment:
| Q |
18 |
catttgagtataaagtttctaaattcattgaacttaatttggtacggtaggactcgtaacaaagtaatcaagcaattctaagttattttggaaaagcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26099579 |
catttgagtataaagtttctaaattcattgaacctaatttggtatggtaggactcgtaacaaagtaatcaagcaattctaagttattttggtaaagcaaa |
26099678 |
T |
|
| Q |
118 |
gcagattttattaactaccacatgccaaaggagaagacatgcttagatagtgatacaaaatcattacaaaatagcctatgtatacattttactgggctct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26099679 |
gcagattttattaactaccacatgccaaaggagaagacatgcttagatagtgatacaaaatcattacaaaatagcctatgtatacattttactgggctat |
26099778 |
T |
|
| Q |
218 |
aacacatgtacgcatgaattcatctatgtcttatactgatttcaagtgaatcaccatctctcctattctattctattctctcatataccttggcagatct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26099779 |
tacacatgtacgcatgaattcatctatgtcttatactgatttcaagtgaatcaccgtctcttctattctattctattctctcatataccttggcagatct |
26099878 |
T |
|
| Q |
318 |
tttgcaactctcagtcactgccagtttggaagacctctggcagatctttcatacagcttctaacacggagctcctaaaattcatgttgaattccttgaca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
26099879 |
tttgcaactctcagtcactgccagtttggaagacctctggcagatctttcatacagcttgtaacacagagctcctaaaattcatgttaaattc--tgaca |
26099976 |
T |
|
| Q |
418 |
ttccaatctgaacatatt |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26099977 |
ttccaatctgaacatatt |
26099994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University