View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1427_low_3 (Length: 416)
Name: NF1427_low_3
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1427_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 1624181 - 1623781
Alignment:
| Q |
1 |
tatagctctgcaacagcaggtgatttatatttcatttcctgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcgaactaa |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1624181 |
tatagctctgcaacagcaggtgaattatatttcatttcctgttttatgttcttgttataagagaaaaa-caatattcactgcttgaaaaagtcgaactaa |
1624083 |
T |
|
| Q |
101 |
caacgaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcagtgctgaaaagccctatttagttttttctagttttaaagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1624082 |
caacgaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcagtgttgaaaagccctatttagttttttctagttttaaagcc |
1623983 |
T |
|
| Q |
201 |
ctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtctaatggcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
1623982 |
ctaaaattcaatagtaaatcagtgttgaaaattagatgtcatggaaatgtgctctttatatcatagctatatatgatattcataattctctaatggcttt |
1623883 |
T |
|
| Q |
301 |
cttgcaacttgtctagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattga |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1623882 |
cttgcaacttgtctaacacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattga |
1623783 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
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|| |
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|
| T |
1623782 |
tg |
1623781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 191 - 402
Target Start/End: Complemental strand, 1606873 - 1606659
Alignment:
| Q |
191 |
ttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtc |
290 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
1606873 |
ttttaaagccctaaaattcaatactaaatcagtgtttaaaactagttgtcacggaaatgtgctctttatatcataggtatatatgatattcatactggtc |
1606774 |
T |
|
| Q |
291 |
taatggctttcttgcaacttgtctagcacgaacactt--tagagtttagaatgttatttatagtttctaa-tttttacatatttctcttgaatcttttaa |
387 |
Q |
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|||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
1606773 |
taatggctttcttgcaacttatgtagcacgaacactttatagagtttagattgttatttatagtttctaattttttacatatttctcttggatcatttaa |
1606674 |
T |
|
| Q |
388 |
atttaggcattgatg |
402 |
Q |
| |
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||||||| ||||||| |
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| T |
1606673 |
atttaggtattgatg |
1606659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 1607160 - 1607056
Alignment:
| Q |
1 |
tatagctctgcaacagcaggtgatttatatttcatttcctgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcgaactaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
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|
| T |
1607160 |
tatagctctgcaacagcaggtgaattatatttcatttcctgttttatgttcttgttataagaga-aaaacaatattcactgctagaaaaagtttaactaa |
1607062 |
T |
|
| Q |
101 |
caacga |
106 |
Q |
| |
|
|||||| |
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|
| T |
1607061 |
caacga |
1607056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 18781563 - 18781475
Alignment:
| Q |
314 |
tagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattgatg |
402 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18781563 |
tagcacggacactttagagtttagattgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatg |
18781475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 18785207 - 18785103
Alignment:
| Q |
1 |
tatagctctgcaacagcaggtgatttatatttcatttcctgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcgaactaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
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| T |
18785207 |
tatagctctgcaacagcaggtgaattataattcatttcctgttttgtgttcttgttataagaga-aaaacaatattcactgctagaaaaagtttaactaa |
18785109 |
T |
|
| Q |
101 |
caacga |
106 |
Q |
| |
|
|||||| |
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|
| T |
18785108 |
caacga |
18785103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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