View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1427_low_4 (Length: 391)
Name: NF1427_low_4
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1427_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 48 - 356
Target Start/End: Original strand, 4238560 - 4238872
Alignment:
| Q |
48 |
agaggtactagtagaagccttgttcttagtcttgaattgtgtaggcttttttatcttaagcactttagttttaggagatgtagccaaaccatttgcagct |
147 |
Q |
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| T |
4238560 |
agaggtacttgtagaagccttgttcttagtcttgaattgtgtaggcttttttatcttaagcactttagttttaggagatgtagccaaaccatttgcagct |
4238659 |
T |
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| Q |
148 |
tctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtgactgcaccaacatgttttcatgt----taactatatatgtaacca |
243 |
Q |
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| T |
4238660 |
tctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtgactgcaccaacatgttttcatgttaactaactatatatgtaacca |
4238759 |
T |
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| Q |
244 |
gatataattcaaatatcaatcaaattaagtttaagtacagaataatacttgcatgacaatagtatgatctattgaatattcaactaattaaaaccgtgat |
343 |
Q |
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| T |
4238760 |
gacataattgaaatatcaatcaaattaagtttaagtacggaataatacttgcatgactctagtatgatctattgaatattcaactaattaaaaccgtgat |
4238859 |
T |
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| Q |
344 |
ataataataaaaa |
356 |
Q |
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| T |
4238860 |
ataataaaaaaaa |
4238872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 19920922 - 19921039
Alignment:
| Q |
238 |
taaccagatataattcaaatatcaatcaaattaagtttaagtacagaataatacttgcatgacaatagtatgatctattgaatattcaactaattaaaac |
337 |
Q |
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| T |
19920922 |
taactagatataattcaaata---atcaaattaagtttaag-atggaataatacttgcatgactctagtgtgatctattgaatattcaactaattaaaac |
19921017 |
T |
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| Q |
338 |
cgtgatataataataaaaatta |
359 |
Q |
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| T |
19921018 |
cgtgatataatattaaaaatta |
19921039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 19915996 - 19916113
Alignment:
| Q |
92 |
gcttttttatcttaagcactttagttttaggagatgtagccaaaccatttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagc |
191 |
Q |
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|||| ||||||||||||||||| ||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
19915996 |
gcttatttatcttaagcactttggttttagtggatgtagccaatccattggcagc------catggcccgtcttgcctttctctgcctgattccacaacc |
19916089 |
T |
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| Q |
192 |
attgcaaagtgactgcaccaacat |
215 |
Q |
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| T |
19916090 |
attgcaaagtgacggcaccaacat |
19916113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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