View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1427_low_5 (Length: 302)
Name: NF1427_low_5
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1427_low_5 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 22877807 - 22877522
Alignment:
| Q |
17 |
catcatccctatagctagagccaatatgtcacttctctttacatatagtgcagcatctaaaaaagaaagttaggttttacaattagtccattacatagtt |
116 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22877807 |
catcatacctatagcgagagccaatatgtcacttctctttacatatagtgcagcacctaaaaaagaaagttaggttttacaattagtccattacatagtt |
22877708 |
T |
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| Q |
117 |
tttaacccttaattgaataaacagtagnnnnnnngttgagataactcccattgtagaaaatatggtaagctcattttaggtggtgagggcatgtgtgaaa |
216 |
Q |
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| T |
22877707 |
tttaaccctgaattgaataaacagtagaaaaaaagttgagataactcccattgtataaaatatggtaagcttattttaggtggtgtgggcatgtcagaaa |
22877608 |
T |
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| Q |
217 |
aagccacataataacaccataaggagagtaagaaaaatagaagctgtgataaagtggtggagaagaaatgaagaagaaccagaaaa |
302 |
Q |
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| T |
22877607 |
aagtcccataaaaacaccataaggagagtaagaaaaacagaagctgtgataaagttgtggagaagaaatgaagaagaaccagaaaa |
22877522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 22842263 - 22841978
Alignment:
| Q |
17 |
catcatccctatagctagagccaatatgtcacttctctttacatatagtgcagcatctaaaaaagaaagttaggttttacaattagtccattacatagtt |
116 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22842263 |
catcatacctatagcgagagccaatatgtcacttctctttacatatagtgcagcacctaaaaaagaaagttagattttacaattagtccattacatagtt |
22842164 |
T |
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| Q |
117 |
tttaacccttaattgaataaacagtagnnnnnnngttgagataactcccattgtagaaaatatggtaagctcattttaggtggtgagggcatgtgtgaaa |
216 |
Q |
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| T |
22842163 |
tttaaccctgacttaaataaacagtagagaaaaagttgagataactcccattgtagaaaatatggtaagctcattttaggtgatgtgggcatgtgtgaaa |
22842064 |
T |
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| Q |
217 |
aagccacataataacaccataaggagagtaagaaaaatagaagctgtgataaagtggtggagaagaaatgaagaagaaccagaaaa |
302 |
Q |
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| T |
22842063 |
aagccccataataacaccataacgagggtaagaaaaacagaaactatgataaagtggtggagaagaaatgaagaagaaccagaaaa |
22841978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 22812170 - 22811961
Alignment:
| Q |
17 |
catcatccctatagctagagccaatatgtcacttctctttacatatagtgcagcatctaaaaaagaaagttaggttttacaattagtccattacatagtt |
116 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22812170 |
catcatacctatagcaagagccaatatgtcacttctctttacagacagtgcagcacctaaaaaagaaagttaggttttacaattagtccattacatagtt |
22812071 |
T |
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| Q |
117 |
tttaacccttaattgaataaacagtagnnnnnnngttgagataactcccattgtagaaaatatggtaagctcattttaggtggtgagggcatgtgtgaaa |
216 |
Q |
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| T |
22812070 |
tttaaccctgaactaaataaaca-tagagaaaaagttgagataactcccattgtagaaaatatggtaagctcattttaggtggtgtgggcatgtgagaaa |
22811972 |
T |
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| Q |
217 |
aagccacataa |
227 |
Q |
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||||||||||| |
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| T |
22811971 |
aagccacataa |
22811961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 22871100 - 22870962
Alignment:
| Q |
164 |
ccattgtagaaaatatggtaagctcattttaggtggtgagggcatgtgtgaaaaagccacataataacaccataaggagagtaagaaaaatagaagctgt |
263 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||| ||| |||||||||| |||| || | |
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| T |
22871100 |
ccattgtagaaaatatggtaagctcattttgggtggtgtgggcatgtgtggaaaagcctcataataacaccataacgagggtaagaaaaacagaaactat |
22871001 |
T |
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| Q |
264 |
gataaagtggtggagaagaaatgaagaagaaccagaaaa |
302 |
Q |
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| T |
22871000 |
gataaagcggtggagaagaaatgaagaagaaccagaaaa |
22870962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 22895540 - 22895331
Alignment:
| Q |
17 |
catcatccctatagctagagccaatatgtcacttctctttacatatagtgcagcatctaaaaaagaaagttaggttttacaattagtccattacatagtt |
116 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
22895540 |
catcatacctatagcaagagccaatatgtcacttctctttacagacagtgcagcacctaaaaaagaaagttaggttttaaaattagtccattacatggtt |
22895441 |
T |
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| Q |
117 |
tttaaccc---------ttaattgaataaacagtagnnnnnnngttgagataactcccattgtagaaaatatggtaagctcattttaggtggtgagggca |
207 |
Q |
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|||||||| | |||| ||||||||| || |||||||| || ||||||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
22895440 |
tttaaccctgaattaaataaattaaataaacagcagagaaaaagttgagatggct-ccattgtagaaaaaatggtaagctcattttaggtcgtgtgggca |
22895342 |
T |
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| Q |
208 |
tgtgtgaaaaa |
218 |
Q |
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| T |
22895341 |
tatgtgaaaaa |
22895331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 22895336 - 22895282
Alignment:
| Q |
248 |
gaaaaatagaagctgtgataaagtggtggagaagaaatgaagaagaaccagaaaa |
302 |
Q |
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|||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
22895336 |
gaaaaacagaagctatgataaagtggtggacaagaaatgaagaagaaccagaaaa |
22895282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 22811021 - 22811060
Alignment:
| Q |
262 |
gtgataaagtggtggagaagaaatgaagaagaaccagaaa |
301 |
Q |
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| T |
22811021 |
gtgataaagcggtggagaagaaatgaagaagaaccagaaa |
22811060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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